Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2006 230 6e-58 seq28409 224 2e-56 seq750 197 3e-48 seq1861 194 4e-47 seq22152 158 3e-36 seq10350 158 3e-36 seq39767 141 2e-31 seq21708 140 8e-31 seq21526 120 8e-25 seq11084 93.3 1e-16 seq9815 93.3 1e-16 seq492 78.8 2e-12 seq202 75.2 3e-11 >seq2006 Length=59971 Score = 230 bits (254), Expect = 6e-58 Identities = 296/411 (72%), Gaps = 27/411 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| || ||| |||| || ||| |||||| Sbjct 45568 GCATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCTGAGATAGTGCCCAAATCGTT 45509 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 45508 ACTCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTA 45449 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 45448 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 45389 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| || ||||||||| ||| |||| | ||| || ||| Sbjct 45388 ACTTCCTTGACCTTCCGGCACTGGACAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 45329 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||| | | ||||||| || ||||| Sbjct 45328 GCGGAGACCTGTGTTTTTGGTAAACAGTCACCCCCGCCTGGTCACTGCGACC------CC 45275 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||||| ||||||||||||||||||| || || Sbjct 45274 CTTTGTGAGGA-----GTCACC------------CCTTCTCCCGAAGTTACGGGGCTATT 45232 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| ||||| |||| || ||| | ||||||||||| Sbjct 45231 TTGCTGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGTTATTCTCTACC 45181 >seq28409 Length=2808 Score = 224 bits (248), Expect = 2e-56 Identities = 225/292 (77%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||||||| ||| ||||||| ||| |||||| Sbjct 2346 GCATCTTCACAGACATGTCTATTTCACTGAGCCTCTCTCTGAGACAGTGCCCAGATCGTT 2405 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2406 ACGTCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCGACCTTAGGACCGTTA 2465 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | || ||| |||||||| |||||||||| | ||| |||| | | | || | ||| Sbjct 2466 TAGTGACGACCGCCGTTCACCGGGGCTTTGGTCACTAGCTCCCCTGTCATCAGGTCACCA 2525 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || ||| |||||||| |||||||||||| ||| ||| | ||| || ||| Sbjct 2526 ACTTCCTTGACCATCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTT 2585 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 || ||| |||||||||| ||| ||||||| |||||||| || ||||| Sbjct 2586 GCGGAGACCTGTGTTTTTGGTAATCAGTCGCCCGGGCCTGGTCACTGCGACC 2637 >seq750 Length=101112 Score = 197 bits (218), Expect = 3e-48 Identities = 289/411 (70%), Gaps = 27/411 (7%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| || || ||||||| ||| |||||| Sbjct 68599 GCATCTTCACAGACATGTCTATTTCACCAAGCTTCTCTCCGAGACAGTGCCCAAATCGTT 68540 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68539 ACGCCTTTCGTGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 68480 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| |||||| | | || ||| ||||| || ||| | | | || | ||| Sbjct 68479 TAGTTAGGGCCGCTGCTCACTGGGTCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 68420 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||| ||| | || ||| ||||| ||| |||| | ||| | ||| Sbjct 68419 ACTTCCTTGACCTTCTGGCGCTGGACAGACGTCAGCCCCCATACATGGTCTTACAACTTT 68360 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| |||||||||| |||||||| | ||||| ||| | Sbjct 68359 GCGGAGACCTGTGTTTTTGGTAAACAGTCGTCCGGGCCTGGTCATTGCGACC-CCATTTG 68301 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 | ||| ||| | ||||||||||||||||||| || || Sbjct 68300 --TGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGAGCTATT 68263 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 68262 TTGCTGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACC 68212 >seq1861 Length=62895 Score = 194 bits (214), Expect = 4e-47 Identities = 288/411 (70%), Gaps = 28/411 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| |||||| ||| |||||| Sbjct 27197 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAAGACAGTGCCCAGATCGTT 27256 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 27257 AGGCCTTTCATGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTA 27316 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| ||||||||||| || ||| | | | || | ||| Sbjct 27317 TAGTTACGGCCGCCGTTCACCGGGGCTTCTGTCGCCGGCTCCCCTGTCATCAGGTCACCA 27376 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||| ||||| || ||||||||| || |||| | ||| | ||| Sbjct 27377 ACTTCCTTGACCTTCAGGCACTGGACAGGCGTCAGCCCTCATACATGGTCTTATGACTTT 27436 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||| | ||| || || || ||||| Sbjct 27437 GCGGAGACCTGTGTTTTTGGTAAACAGTCAC-CCGGGCTTGTCACTGCGACC------TT 27489 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | |||| | ||||||||| || || || Sbjct 27490 CTTTGTGAGGA-----------------GGCACCCCTTTTTCCGAAGTTATGGGGCTATT 27532 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 27533 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 27583 >seq22152 Length=4504 Score = 158 bits (174), Expect = 3e-36 Identities = 190/256 (74%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75 |||| || | || ||||||||||||| | | |||||||||| || ||||||| Sbjct 630 TCTTTACTGAGAATTCAATTTCACTGGCCAT--GTCGGAGACAGCGAGGCAGTCGTTACA 573 Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135 | |||||||||||||| ||||| ||| ||||||||||||||||||||||| |||| | Sbjct 572 CTATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCGCTACCTTAGGACAGTTAGAG 513 Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAAT 195 |||| ||||||||||| ||||||||| || | ||||| || | || | | Sbjct 512 TTACTGCCGCCGTTTATCGGGGCTTCCATTCAAAGCTT----ATAAC--ACTTCTCCTTC 459 Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255 || ||||| |||||||||||| |||| || | |||| | || | || ||||||| Sbjct 458 TAGCCTTCTAGCACCGGGCAGGTGTCAGACTCCATACATTGTGTTACCACTTAGCAGAGT 399 Query 256 GCTGTGTTTTTAATAA 271 || |||||||||||| Sbjct 398 CCTATGTTTTTAATAA 383 >seq10350 Length=14826 Score = 158 bits (174), Expect = 3e-36 Identities = 196/267 (73%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 26 GATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGC 85 || ||||||||||||| ||| | ||||| | || | ||||||| |||||||||| Sbjct 4257 GAATTCAATTTCACTGGGTCCATGTCGGAGATAACGGGGTAGTCGTTACACCATTCGTGC 4198 Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145 |||||| ||||| ||||||||||||| ||||||||||||| |||| |||| ||||| Sbjct 4197 AGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAGTTAGAATTACTGCCGC 4138 Query 146 CGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCG 205 | |||| ||||||||| || | ||||| | | | || || | |||||| Sbjct 4137 CTTTTATCGGGGCTTCCATTCAAAGCTT---ATAATACTTCTCCTTC---CAGCCTTCCA 4084 Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265 |||||||||| | |||| || |||||| | || | || ||||||| || |||||| Sbjct 4083 GCACCGGGCATGTGTCAGACTCTATACATTGTGTTACCACTTAGCAGAGTCCTATGTTTT 4024 Query 266 TAATAAACAGTCGCAGCGGCCTGGTAT 292 ||||||||| |||| | |||| ||| Sbjct 4023 TAATAAACAATCGCTACCCCCTGATAT 3997 >seq39767 Length=1735 Score = 141 bits (156), Expect = 2e-31 Identities = 185/254 (73%), Gaps = 8/254 (3%) Strand=Plus/Minus Query 26 GATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGC 85 || || |||||||||| | | |||||| |||| || ||||||| | ||| |||| Sbjct 1032 GAATTTAATTTCACTGGCCAT--GTTGGAGATAGCGAGGCAGTCGTTACACTATTTGTGC 975 Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145 |||| | ||||| | | ||||||||||||||||||||||| |||| ||||| ||||| Sbjct 974 AGGTTGCTACTTATGCCATAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGC 915 Query 146 CGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCG 205 |||||| |||||| || || | ||||| || | || | | || |||||| Sbjct 914 CGTTTATCGGGGCATCCATTCAAAGCTT----ATAAC--ACTTCTCCTTCTAGCCTTCCA 861 Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265 |||||||| ||| |||| || |||||| | || | || | ||||| || |||||| Sbjct 860 GCACCGGGTAGGTGTCAGACTCTATACATTGTGTTACCACTTAGTAGAGTCCTATGTTTT 801 Query 266 TAATAAACAGTCGC 279 ||||||||| |||| Sbjct 800 TAATAAACAATCGC 787 >seq21708 Length=4688 Score = 140 bits (154), Expect = 8e-31 Identities = 148/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 102 GACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC 161 |||||||||||||||||||||||||||||||| ||||||||| || || ||||||||||| Sbjct 3342 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCACCATTCACCGGGGCTTC 3283 Query 162 GATCAAGAGCT---TCG-CGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGG 217 | ||| |||| ||| | | | | ||| | || ||||||| |||| ||||||| Sbjct 3282 GGTCATCAGCTCCCTCGTCATCATGTCACCAACTTCCTTGACCTTCCAGCACTGGGCAGG 3223 Query 218 CGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTC 277 |||| ||| |||| | ||| || ||||| ||| |||||||||| ||||||||| Sbjct 3222 TGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTC 3163 Query 278 GCAGCGGCCTGGT 290 | |||||||| Sbjct 3162 ACCTGGGCCTGGT 3150 >seq21526 Length=4763 Score = 120 bits (132), Expect = 8e-25 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162 ||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | Sbjct 1604 ACAAGAAATTTCGCTACCTTAGGACCGTTATAGTTACGGCAGCCATTTACCGGGGCTTTG 1545 Query 163 ATCAAGAG----CTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGC 218 || | ||| | | || | ||| | || ||||||| |||| ||||||| Sbjct 1544 GTCGTCGGCTCCCTTGTCATCAGGTCACCAAGTTCCTTGACCTTCCAGCACTAGGCAGGC 1485 Query 219 GTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 |||| ||| |||| | ||| || ||||| ||| |||| ||||| ||| |||||| Sbjct 1484 GTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGATCTGTTTTTTTGGTAAGCAGTCG 1425 Query 279 CAGCGGCCTGGT 290 | |||||||| Sbjct 1424 CTCGGGCCTGGT 1413 >seq11084 Length=13597 Score = 93.3 bits (102), Expect = 1e-16 Identities = 86/108 (80%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 52 GGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 111 |||||||||| | ||||||| ||| |||||| ||| | ||||| ||||||||||| Sbjct 10203 GGAGACAGCGGTGATCTCGTTACACCACTCGTGCCGGTTGCTACTTATGCGACAAGGAAT 10144 Query 112 TTCGCTACCTTAGGACCGTT-ATTGTTACGGCCGCCGTTTACCGGGGC 158 |||||| ||||||||| ||| | ||| | ||| ||||||||||| || Sbjct 10143 TTCGCTTCCTTAGGACAGTTAAGAGTTTCTGCCACCGTTTACCGGCGC 10096 >seq9815 Length=15717 Score = 93.3 bits (102), Expect = 1e-16 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| || || |||||| ||| |||||| Sbjct 2561 GCATCTTCACAGAAATGTCTATTTCACCAAGCTTCTCTATGAGACAATGCCCATATCGTT 2620 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| || ||| ||| ||||||||| |||||||||||| ||||||||| || ||||| Sbjct 2621 ACGCCTTTTGTGTGAGTCAGAACTTACCTGACAAGGAATTTTGCTACCTTAAGATCGTTA 2680 Query 133 T 133 | Sbjct 2681 T 2681 >seq492 Length=121577 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | | ||||| ||||||||| | ||||||||||||| Sbjct 87853 CCTTCTCCCGAAGTTACGGGGTCATGTTGCCAAGTTCCTTCGACATGGTTCTCTCAAGCG 87794 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 87793 CCCTAGTATACTCTAC 87778 >seq202 Length=161986 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 ||||||||||||| || | ||||||| ||||||| | ||||||| | | || | Sbjct 51412 TGCATCTTCACAGGCATGACTATTTCACCGAGTCTCTCTTTGAGACAGTGTCCAAATTGC 51353 Query 72 TACGCCATTCGTGC-AGGTCGGAACTTACCCGACAAGGAAT 111 |||||| ||||||| || | |||||||||| ||||||||| Sbjct 51352 TACGCCTTTCGTGCGAGTTTAGAACTTACCCAACAAGGAAT 51312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1256918349824