Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq2006 230 6e-58
seq28409 224 2e-56
seq750 197 3e-48
seq1861 194 4e-47
seq22152 158 3e-36
seq10350 158 3e-36
seq39767 141 2e-31
seq21708 140 8e-31
seq21526 120 8e-25
seq11084 93.3 1e-16
seq9815 93.3 1e-16
seq492 78.8 2e-12
seq202 75.2 3e-11
>seq2006
Length=59971
Score = 230 bits (254), Expect = 6e-58
Identities = 296/411 (72%), Gaps = 27/411 (7%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| || ||| |||| || ||| ||||||
Sbjct 45568 GCATCTTCACAGACATGTCTATTTCACCAAGCCTCTCTCTGAGATAGTGCCCAAATCGTT 45509
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 45508 ACTCCTTTCGTGCGGGTCGGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTA 45449
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 45448 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 45389
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| || ||||||||| ||| |||| | ||| || |||
Sbjct 45388 ACTTCCTTGACCTTCCGGCACTGGACAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 45329
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||| | | ||||||| || |||||
Sbjct 45328 GCGGAGACCTGTGTTTTTGGTAAACAGTCACCCCCGCCTGGTCACTGCGACC------CC 45275
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||||| ||||||||||||||||||| || ||
Sbjct 45274 CTTTGTGAGGA-----GTCACC------------CCTTCTCCCGAAGTTACGGGGCTATT 45232
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
|||| |||||||| ||||| |||| || ||| | |||||||||||
Sbjct 45231 TTGCTGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGTTATTCTCTACC 45181
>seq28409
Length=2808
Score = 224 bits (248), Expect = 2e-56
Identities = 225/292 (77%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||||||| ||| ||||||| ||| ||||||
Sbjct 2346 GCATCTTCACAGACATGTCTATTTCACTGAGCCTCTCTCTGAGACAGTGCCCAGATCGTT 2405
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2406 ACGTCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCGACCTTAGGACCGTTA 2465
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| || ||| |||||||| |||||||||| | ||| |||| | | | || | |||
Sbjct 2466 TAGTGACGACCGCCGTTCACCGGGGCTTTGGTCACTAGCTCCCCTGTCATCAGGTCACCA 2525
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || ||| |||||||| |||||||||||| ||| ||| | ||| || |||
Sbjct 2526 ACTTCCTTGACCATCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTT 2585
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|| ||| |||||||||| ||| ||||||| |||||||| || |||||
Sbjct 2586 GCGGAGACCTGTGTTTTTGGTAATCAGTCGCCCGGGCCTGGTCACTGCGACC 2637
>seq750
Length=101112
Score = 197 bits (218), Expect = 3e-48
Identities = 289/411 (70%), Gaps = 27/411 (7%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| || || ||||||| ||| ||||||
Sbjct 68599 GCATCTTCACAGACATGTCTATTTCACCAAGCTTCTCTCCGAGACAGTGCCCAAATCGTT 68540
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68539 ACGCCTTTCGTGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 68480
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| |||| |||||| | | || ||| ||||| || ||| | | | || | |||
Sbjct 68479 TAGTTAGGGCCGCTGCTCACTGGGTCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 68420
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||| ||| | || ||| ||||| ||| |||| | ||| | |||
Sbjct 68419 ACTTCCTTGACCTTCTGGCGCTGGACAGACGTCAGCCCCCATACATGGTCTTACAACTTT 68360
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| |||||||||| |||||||| | ||||| ||| |
Sbjct 68359 GCGGAGACCTGTGTTTTTGGTAAACAGTCGTCCGGGCCTGGTCATTGCGACC-CCATTTG 68301
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
| ||| ||| | ||||||||||||||||||| || ||
Sbjct 68300 --TGAGGA--------------------GGCACCCCTTCTCCCGAAGTTACGGAGCTATT 68263
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
|||| |||||||| ||||| |||| || ||| |||||||||||||
Sbjct 68262 TTGCTGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACC 68212
>seq1861
Length=62895
Score = 194 bits (214), Expect = 4e-47
Identities = 288/411 (70%), Gaps = 28/411 (7%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| |||||| ||| ||||||
Sbjct 27197 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCAAGACAGTGCCCAGATCGTT 27256
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 27257 AGGCCTTTCATGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTA 27316
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| ||||||||||| || ||| | | | || | |||
Sbjct 27317 TAGTTACGGCCGCCGTTCACCGGGGCTTCTGTCGCCGGCTCCCCTGTCATCAGGTCACCA 27376
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||| ||||| || ||||||||| || |||| | ||| | |||
Sbjct 27377 ACTTCCTTGACCTTCAGGCACTGGACAGGCGTCAGCCCTCATACATGGTCTTATGACTTT 27436
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||| | ||| || || || |||||
Sbjct 27437 GCGGAGACCTGTGTTTTTGGTAAACAGTCAC-CCGGGCTTGTCACTGCGACC------TT 27489
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | |||| | ||||||||| || || ||
Sbjct 27490 CTTTGTGAGGA-----------------GGCACCCCTTTTTCCGAAGTTATGGGGCTATT 27532
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||||| |||||||| ||||| |||| || ||| |||||||||||||
Sbjct 27533 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 27583
>seq22152
Length=4504
Score = 158 bits (174), Expect = 3e-36
Identities = 190/256 (74%), Gaps = 8/256 (3%)
Strand=Plus/Minus
Query 16 TCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACG 75
|||| || | || ||||||||||||| | | |||||||||| || |||||||
Sbjct 630 TCTTTACTGAGAATTCAATTTCACTGGCCAT--GTCGGAGACAGCGAGGCAGTCGTTACA 573
Query 76 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTG 135
| |||||||||||||| ||||| ||| ||||||||||||||||||||||| |||| |
Sbjct 572 CTATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCGCTACCTTAGGACAGTTAGAG 513
Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAAT 195
|||| ||||||||||| ||||||||| || | ||||| || | || | |
Sbjct 512 TTACTGCCGCCGTTTATCGGGGCTTCCATTCAAAGCTT----ATAAC--ACTTCTCCTTC 459
Query 196 TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGT 255
|| ||||| |||||||||||| |||| || | |||| | || | || |||||||
Sbjct 458 TAGCCTTCTAGCACCGGGCAGGTGTCAGACTCCATACATTGTGTTACCACTTAGCAGAGT 399
Query 256 GCTGTGTTTTTAATAA 271
|| ||||||||||||
Sbjct 398 CCTATGTTTTTAATAA 383
>seq10350
Length=14826
Score = 158 bits (174), Expect = 3e-36
Identities = 196/267 (73%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 26 GATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGC 85
|| ||||||||||||| ||| | ||||| | || | ||||||| ||||||||||
Sbjct 4257 GAATTCAATTTCACTGGGTCCATGTCGGAGATAACGGGGTAGTCGTTACACCATTCGTGC 4198
Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145
|||||| ||||| ||||||||||||| ||||||||||||| |||| |||| |||||
Sbjct 4197 AGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAGTTAGAATTACTGCCGC 4138
Query 146 CGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCG 205
| |||| ||||||||| || | ||||| | | | || || | ||||||
Sbjct 4137 CTTTTATCGGGGCTTCCATTCAAAGCTT---ATAATACTTCTCCTTC---CAGCCTTCCA 4084
Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265
|||||||||| | |||| || |||||| | || | || ||||||| || ||||||
Sbjct 4083 GCACCGGGCATGTGTCAGACTCTATACATTGTGTTACCACTTAGCAGAGTCCTATGTTTT 4024
Query 266 TAATAAACAGTCGCAGCGGCCTGGTAT 292
||||||||| |||| | |||| |||
Sbjct 4023 TAATAAACAATCGCTACCCCCTGATAT 3997
>seq39767
Length=1735
Score = 141 bits (156), Expect = 2e-31
Identities = 185/254 (73%), Gaps = 8/254 (3%)
Strand=Plus/Minus
Query 26 GATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGC 85
|| || |||||||||| | | |||||| |||| || ||||||| | ||| ||||
Sbjct 1032 GAATTTAATTTCACTGGCCAT--GTTGGAGATAGCGAGGCAGTCGTTACACTATTTGTGC 975
Query 86 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGC 145
|||| | ||||| | | ||||||||||||||||||||||| |||| ||||| |||||
Sbjct 974 AGGTTGCTACTTATGCCATAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGC 915
Query 146 CGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCG 205
|||||| |||||| || || | ||||| || | || | | || ||||||
Sbjct 914 CGTTTATCGGGGCATCCATTCAAAGCTT----ATAAC--ACTTCTCCTTCTAGCCTTCCA 861
Query 206 GCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTT 265
|||||||| ||| |||| || |||||| | || | || | ||||| || ||||||
Sbjct 860 GCACCGGGTAGGTGTCAGACTCTATACATTGTGTTACCACTTAGTAGAGTCCTATGTTTT 801
Query 266 TAATAAACAGTCGC 279
||||||||| ||||
Sbjct 800 TAATAAACAATCGC 787
>seq21708
Length=4688
Score = 140 bits (154), Expect = 8e-31
Identities = 148/193 (77%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 102 GACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC 161
|||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct 3342 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCACCATTCACCGGGGCTTC 3283
Query 162 GATCAAGAGCT---TCG-CGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGG 217
| ||| |||| ||| | | | | ||| | || ||||||| |||| |||||||
Sbjct 3282 GGTCATCAGCTCCCTCGTCATCATGTCACCAACTTCCTTGACCTTCCAGCACTGGGCAGG 3223
Query 218 CGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTC 277
|||| ||| |||| | ||| || ||||| ||| |||||||||| |||||||||
Sbjct 3222 TGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTC 3163
Query 278 GCAGCGGCCTGGT 290
| ||||||||
Sbjct 3162 ACCTGGGCCTGGT 3150
>seq21526
Length=4763
Score = 120 bits (132), Expect = 8e-25
Identities = 142/192 (74%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 103 ACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCG 162
||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| |
Sbjct 1604 ACAAGAAATTTCGCTACCTTAGGACCGTTATAGTTACGGCAGCCATTTACCGGGGCTTTG 1545
Query 163 ATCAAGAG----CTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGC 218
|| | ||| | | || | ||| | || ||||||| |||| |||||||
Sbjct 1544 GTCGTCGGCTCCCTTGTCATCAGGTCACCAAGTTCCTTGACCTTCCAGCACTAGGCAGGC 1485
Query 219 GTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
|||| ||| |||| | ||| || ||||| ||| |||| ||||| ||| ||||||
Sbjct 1484 GTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGATCTGTTTTTTTGGTAAGCAGTCG 1425
Query 279 CAGCGGCCTGGT 290
| ||||||||
Sbjct 1424 CTCGGGCCTGGT 1413
>seq11084
Length=13597
Score = 93.3 bits (102), Expect = 1e-16
Identities = 86/108 (80%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 52 GGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 111
|||||||||| | ||||||| ||| |||||| ||| | ||||| |||||||||||
Sbjct 10203 GGAGACAGCGGTGATCTCGTTACACCACTCGTGCCGGTTGCTACTTATGCGACAAGGAAT 10144
Query 112 TTCGCTACCTTAGGACCGTT-ATTGTTACGGCCGCCGTTTACCGGGGC 158
|||||| ||||||||| ||| | ||| | ||| ||||||||||| ||
Sbjct 10143 TTCGCTTCCTTAGGACAGTTAAGAGTTTCTGCCACCGTTTACCGGCGC 10096
>seq9815
Length=15717
Score = 93.3 bits (102), Expect = 1e-16
Identities = 93/121 (77%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| || || |||||| ||| ||||||
Sbjct 2561 GCATCTTCACAGAAATGTCTATTTCACCAAGCTTCTCTATGAGACAATGCCCATATCGTT 2620
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| || ||| ||| ||||||||| |||||||||||| ||||||||| || |||||
Sbjct 2621 ACGCCTTTTGTGTGAGTCAGAACTTACCTGACAAGGAATTTTGCTACCTTAAGATCGTTA 2680
Query 133 T 133
|
Sbjct 2681 T 2681
>seq492
Length=121577
Score = 78.8 bits (86), Expect = 2e-12
Identities = 63/76 (83%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402
||||||||||||||||||| | | | ||||| ||||||||| | |||||||||||||
Sbjct 87853 CCTTCTCCCGAAGTTACGGGGTCATGTTGCCAAGTTCCTTCGACATGGTTCTCTCAAGCG 87794
Query 403 CCTTGGTATTCTCTAC 418
|| | |||| ||||||
Sbjct 87793 CCCTAGTATACTCTAC 87778
>seq202
Length=161986
Score = 75.2 bits (82), Expect = 3e-11
Identities = 78/101 (77%), Gaps = 1/101 (1%)
Strand=Plus/Minus
Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
||||||||||||| || | ||||||| ||||||| | ||||||| | | || |
Sbjct 51412 TGCATCTTCACAGGCATGACTATTTCACCGAGTCTCTCTTTGAGACAGTGTCCAAATTGC 51353
Query 72 TACGCCATTCGTGC-AGGTCGGAACTTACCCGACAAGGAAT 111
|||||| ||||||| || | |||||||||| |||||||||
Sbjct 51352 TACGCCTTTCGTGCGAGTTTAGAACTTACCCAACAAGGAAT 51312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1256918349824
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