Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 466 5e-129
seq2355 408 1e-111
seq12648 351 3e-94
seq35365 147 7e-33
seq5950 134 4e-29
seq3447 132 1e-28
seq19579 118 3e-24
seq19050 77.0 1e-11
seq839 77.0 1e-11
>seq4906
Length=31215
Score = 466 bits (516), Expect = 5e-129
Identities = 403/497 (81%), Gaps = 3/497 (1%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1418 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1359
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 1358 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1299
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || || ||| || | ||||||| ||||||| |||||||||
Sbjct 1298 TTGAAAGAGAGGGGTGCC--TCCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1241
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|| ||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1240 CTTGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1181
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | || |||| || || | || |||||||||||| || ||||||||||||| |||
Sbjct 1180 CACCGTTGAGTTTGGAACCTTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1121
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||| ||| | ||| |||||||||||||||||| | | ||
Sbjct 1120 GACGTCAAGTCATCATGCCCCTAATGCCCTAGGCGACACACGTGCTACAATGGCCGAGAC 1061
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| | || |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 1060 AAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1001
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479
||| |||||||||| ||| |||||| ||||||||||||||||| | |||| ||| |
Sbjct 1000 TAGGCTGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 941
Query 480 CGGTGAATACGTTCCCG 496
|||||||| ||||||||
Sbjct 940 CGGTGAATTCGTTCCCG 924
>seq2355
Length=54213
Score = 408 bits (452), Expect = 1e-111
Identities = 344/420 (82%), Gaps = 2/420 (0%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 38058 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 38117
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| | || ||||
Sbjct 38118 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 38177
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | ||||||| ||||||| |||||||||
Sbjct 38178 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 38235
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
|||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 38236 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 38295
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
|| | || |||| || || || || |||||||||||| || ||||||||||||| |||
Sbjct 38296 CACCGTTGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 38355
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| ||||||||||||||||| ||||| |||||||||||||||||| | ||
Sbjct 38356 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 38415
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
|||||| |||| |||||||| ||| || ||| ||| || ||||||||||||||
Sbjct 38416 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 38475
>seq12648
Length=11425
Score = 351 bits (388), Expect = 3e-94
Identities = 291/353 (82%), Gaps = 2/353 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2503 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 2562
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||| |||||||||||||||| |||||||| || || ||||
Sbjct 2563 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGCCTTGACATGCTGCGAATCCTC 2622
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
| || | ||||| | || |||||| || | | ||||| ||||||| ||||||||
Sbjct 2623 TTGAAAGAGAGGGGTACC-TTCGGGA-ACGTGGACATAGGTGGTGCATGGCTGTCGTCAA 2680
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
||||||||| || ||||||||||||||||||||| ||||||||||| | | ||||||||
Sbjct 2681 CTCGTGTCGCAAGGTGTTGGGTTAAGTCCCGCAACAAGCGCAACCCTCATGTTTAGTTGC 2740
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
| | || |||| || || || || |||| ||| ||| || ||||||||||||| |||
Sbjct 2741 AACCGTTGAGTTTGGAACCCTGAGCAGACTACCGATGATAAGCCGGAGGAAGGTGAGGAT 2800
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353
|| ||||| ||||||||||||||||| ||| ||| | ||||||||||||||||
Sbjct 2801 GATGTCAAGTCATCATGCCCCTTATGCTTTAGGCGAGACACGTGCTACAATGG 2853
>seq35365
Length=2001
Score = 147 bits (162), Expect = 7e-33
Identities = 119/144 (83%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||| ||| |||||| |||| |||||||||| ||| || |||||||||||||||||||||
Sbjct 1280 ACATGTGGTGCATGTCTGTCATCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 1339
Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275
|||||||||||| | |||||||||| | || |||| || || || || ||||| |||
Sbjct 1340 GAGCGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAGCAGACTGTCGG 1399
Query 276 TGACAAACCGGAGGAAGGTGGGGA 299
||| || ||||||||||||| |||
Sbjct 1400 TGATAAGCCGGAGGAAGGTGAGGA 1423
>seq5950
Length=26309
Score = 134 bits (148), Expect = 4e-29
Identities = 118/147 (80%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215
||| ||| |||||| ||||||||||||||| || || ||||||||||||||| |||||
Sbjct 11538 ACATGTGGTGCATGTCTGTCGTCAGCTCGTGCAGTAAGGTGTTGGGTTAAGTCCAGCAAC 11479
Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275
||| |||||||| | |||||||||| | || |||| || || || || ||||| ||
Sbjct 11478 GAGAGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAGCAGACTGTCGA 11419
Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302
||| || ||||||||||||| ||| ||
Sbjct 11418 TGATAAGCCGGAGGAAGGTGAGGATGA 11392
>seq3447
Length=41424
Score = 132 bits (146), Expect = 1e-28
Identities = 132/173 (76%), Gaps = 10/173 (6%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||||| ||||||||||| || | |||||||||||||||||||||||||
Sbjct 10551 CGCAAGAATGAAACTCCAAGGAATTGACAAGGGCTCGCACAAGCGGTGGAGCATGTGGTT 10492
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126
|||||||| |||| |||||||||||||||| |||||||| || ||||| || |
Sbjct 10491 TAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGTCGCGAATCCTCTTGAAA 10432
Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179
||||| || | || | ||||||| ||||||| ||||||||
Sbjct 10431 GAGAGG----------GGCGCACGCTGACACAGGTGGTGCATGGCTGTCGTCA 10389
Score = 114 bits (126), Expect = 4e-23
Identities = 91/108 (84%), Gaps = 1/108 (1%)
Strand=Plus/Minus
Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305
|| |||| || || |||||| ||||||| |||| || ||||||||| ||| ||| |||||
Sbjct 10385 TTGAGTTTGG-ACCCTAAGTAGACTGCCAGTGATAAGCCGGAGGAAAGTGAGGATGACGT 10327
Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353
||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 10326 CAAGTCATCATGCCCCTTATGCCCAGGGCAACACACGTGCTACAATGG 10279
>seq19579
Length=5662
Score = 118 bits (130), Expect = 3e-24
Identities = 82/93 (88%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 335 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCTCACAAGCGGTGGAGCAT 276
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93
||||||||||| || |||| || |||| |||||
Sbjct 275 GTGGTTTAATTAGATGCAAAGCAAAGAGCCTTA 243
>seq19050
Length=5948
Score = 77.0 bits (84), Expect = 1e-11
Identities = 56/65 (86%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463
|| ||||||||||||||||| |||||||| | ||| ||||||| || || ||||||||||
Sbjct 3520 GTCCTCAGTTCGGATTGTAGGCTGCAACTTGCCTACATGAAGCCGGGATAGCTAGTAATC 3461
Query 464 GTAGA 468
||||
Sbjct 3460 CTAGA 3456
>seq839
Length=95879
Score = 77.0 bits (84), Expect = 1e-11
Identities = 80/103 (78%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64
||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || ||
Sbjct 9861 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 9803
Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107
|||||| || |||| || ||| |||||||| || |||||
Sbjct 9802 CTTAATTTGACTCAACACGGGGAAACTTACCAAGTCCAGACAT 9760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1499369605120
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