Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq4906 466 5e-129 seq2355 408 1e-111 seq12648 351 3e-94 seq35365 147 7e-33 seq5950 134 4e-29 seq3447 132 1e-28 seq19579 118 3e-24 seq19050 77.0 1e-11 seq839 77.0 1e-11 >seq4906 Length=31215 Score = 466 bits (516), Expect = 5e-129 Identities = 403/497 (81%), Gaps = 3/497 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1418 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1359 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 1358 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 1299 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || || ||| || | ||||||| ||||||| ||||||||| Sbjct 1298 TTGAAAGAGAGGGGTGCC--TCCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 1241 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 || ||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1240 CTTGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 1181 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || | || |||||||||||| || ||||||||||||| ||| Sbjct 1180 CACCGTTGAGTTTGGAACCTTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 1121 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||| ||| | ||| |||||||||||||||||| | | || Sbjct 1120 GACGTCAAGTCATCATGCCCCTAATGCCCTAGGCGACACACGTGCTACAATGGCCGAGAC 1061 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| | || |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 1060 AAAGGGTCGTGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 1001 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 ||| |||||||||| ||| |||||| ||||||||||||||||| | |||| ||| | Sbjct 1000 TAGGCTGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCCATACGG 941 Query 480 CGGTGAATACGTTCCCG 496 |||||||| |||||||| Sbjct 940 CGGTGAATTCGTTCCCG 924 >seq2355 Length=54213 Score = 408 bits (452), Expect = 1e-111 Identities = 344/420 (82%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 38058 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 38117 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 38118 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 38177 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 38178 TTGAAAGAGAGGGGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 38235 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 38236 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 38295 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || || |||||||||||| || ||||||||||||| ||| Sbjct 38296 CACCGTTGAGTTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 38355 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| ||||||||||||||||| ||||| |||||||||||||||||| | || Sbjct 38356 GACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGAC 38415 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| |||||||| ||| || ||| ||| || |||||||||||||| Sbjct 38416 AAAGGGTCGCGATCCCGCGAGGGTGAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTG 38475 >seq12648 Length=11425 Score = 351 bits (388), Expect = 3e-94 Identities = 291/353 (82%), Gaps = 2/353 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2503 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 2562 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| || || |||| Sbjct 2563 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGCCTTGACATGCTGCGAATCCTC 2622 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || |||||| || | | ||||| ||||||| |||||||| Sbjct 2623 TTGAAAGAGAGGGGTACC-TTCGGGA-ACGTGGACATAGGTGGTGCATGGCTGTCGTCAA 2680 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||| || ||||||||||||||||||||| ||||||||||| | | |||||||| Sbjct 2681 CTCGTGTCGCAAGGTGTTGGGTTAAGTCCCGCAACAAGCGCAACCCTCATGTTTAGTTGC 2740 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 | | || |||| || || || || |||| ||| ||| || ||||||||||||| ||| Sbjct 2741 AACCGTTGAGTTTGGAACCCTGAGCAGACTACCGATGATAAGCCGGAGGAAGGTGAGGAT 2800 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 || ||||| ||||||||||||||||| ||| ||| | |||||||||||||||| Sbjct 2801 GATGTCAAGTCATCATGCCCCTTATGCTTTAGGCGAGACACGTGCTACAATGG 2853 >seq35365 Length=2001 Score = 147 bits (162), Expect = 7e-33 Identities = 119/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||| ||| |||||| |||| |||||||||| ||| || ||||||||||||||||||||| Sbjct 1280 ACATGTGGTGCATGTCTGTCATCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAAC 1339 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 |||||||||||| | |||||||||| | || |||| || || || || ||||| ||| Sbjct 1340 GAGCGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAGCAGACTGTCGG 1399 Query 276 TGACAAACCGGAGGAAGGTGGGGA 299 ||| || ||||||||||||| ||| Sbjct 1400 TGATAAGCCGGAGGAAGGTGAGGA 1423 >seq5950 Length=26309 Score = 134 bits (148), Expect = 4e-29 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||| ||| |||||| ||||||||||||||| || || ||||||||||||||| ||||| Sbjct 11538 ACATGTGGTGCATGTCTGTCGTCAGCTCGTGCAGTAAGGTGTTGGGTTAAGTCCAGCAAC 11479 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||| |||||||| | |||||||||| | || |||| || || || || ||||| || Sbjct 11478 GAGAGCAACCCTCGTGTTTAGTTGCCACCGTTGAGTTTGGAACCCTGAGCAGACTGTCGA 11419 Query 276 TGACAAACCGGAGGAAGGTGGGGACGA 302 ||| || ||||||||||||| ||| || Sbjct 11418 TGATAAGCCGGAGGAAGGTGAGGATGA 11392 >seq3447 Length=41424 Score = 132 bits (146), Expect = 1e-28 Identities = 132/173 (76%), Gaps = 10/173 (6%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||| ||||||||||| || | ||||||||||||||||||||||||| Sbjct 10551 CGCAAGAATGAAACTCCAAGGAATTGACAAGGGCTCGCACAAGCGGTGGAGCATGTGGTT 10492 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| |||| |||||||||||||||| |||||||| || ||||| || | Sbjct 10491 TAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGTCGCGAATCCTCTTGAAA 10432 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 ||||| || | || | ||||||| ||||||| |||||||| Sbjct 10431 GAGAGG----------GGCGCACGCTGACACAGGTGGTGCATGGCTGTCGTCA 10389 Score = 114 bits (126), Expect = 4e-23 Identities = 91/108 (84%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || |||| || || |||||| ||||||| |||| || ||||||||| ||| ||| ||||| Sbjct 10385 TTGAGTTTGG-ACCCTAAGTAGACTGCCAGTGATAAGCCGGAGGAAAGTGAGGATGACGT 10327 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGG 353 ||| ||||||||||||||||| |||| |||||||||||||||||| Sbjct 10326 CAAGTCATCATGCCCCTTATGCCCAGGGCAACACACGTGCTACAATGG 10279 >seq19579 Length=5662 Score = 118 bits (130), Expect = 3e-24 Identities = 82/93 (88%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 335 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCTCACAAGCGGTGGAGCAT 276 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTA 93 ||||||||||| || |||| || |||| ||||| Sbjct 275 GTGGTTTAATTAGATGCAAAGCAAAGAGCCTTA 243 >seq19050 Length=5948 Score = 77.0 bits (84), Expect = 1e-11 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 404 GTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATC 463 || ||||||||||||||||| |||||||| | ||| ||||||| || || |||||||||| Sbjct 3520 GTCCTCAGTTCGGATTGTAGGCTGCAACTTGCCTACATGAAGCCGGGATAGCTAGTAATC 3461 Query 464 GTAGA 468 |||| Sbjct 3460 CTAGA 3456 >seq839 Length=95879 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/103 (78%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGG--GGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||| ||||||| |||||||||||||| || | | ||| || ||||||| || || Sbjct 9861 CGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCAC-CACCAGGAGTGGAGCCTGCGG 9803 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||| || |||| || ||| |||||||| || ||||| Sbjct 9802 CTTAATTTGACTCAACACGGGGAAACTTACCAAGTCCAGACAT 9760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1499369605120