Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq839 280 2e-73 seq298 123 4e-26 seq512 116 6e-24 seq7896 107 3e-21 >seq839 Length=95879 Score = 280 bits (310), Expect = 2e-73 Identities = 220/260 (85%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | || ||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 9492 ACTCGTTGAATATGTTAGTGTAGCGAGCGTGCGGCCCAGAACATCTAAGGGCATCATAGA 9551 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 9552 CCTGTTATTGCCTCAAACTTCCTTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 9609 Query 120 CCACCAACCATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 || | | | | || |||| |||||||| | ||||||||||||||| | |||| Sbjct 9610 CCGCGGAGGAGACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACAGAAT 9669 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9670 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 9729 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| ||| |||||| Sbjct 9730 GAAAGAGCTCTCAGTCTGTC 9749 >seq298 Length=144948 Score = 123 bits (136), Expect = 4e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | |||||||||||| |||| | |||||| |||||||||| ||||||| Sbjct 8633 CTAATTAGCAAGCTAAGGTCTCGTTTGTTAATGAAATTAATCAGACAAATCCATCCACCA 8692 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||||||| | ||||||||| ||| || |||||||||||||||| Sbjct 8693 ACTAAGAACGACTATGCACCACTACCTATTGAATCAAGAAAGAGCT 8738 >seq512 Length=118443 Score = 116 bits (128), Expect = 6e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||||| |||||||||||| |||| |||||| |||||||||| |||||||| Sbjct 108178 CTAGTTAGCAGGCTAAGGTCTCGTTTGTTAATAAAATTAATCAGACAAATCCCTCCACCA 108119 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||| ||||||||| ||| || ||||||| |||||||| | | | |||| Sbjct 108118 ACTAAGAACAAGTATGCACCACTACCTATTGAATCAATAAAGAGCTCTTAGTTTGTC 108062 >seq7896 Length=19876 Score = 107 bits (118), Expect = 3e-21 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 7208 ACTCGTTGAATACATCAGTGTAGCGCGCGTGAGGCCCAGAACATCTAAGGGCATCACAGA 7149 Query 62 CCTGTTATTGCCTC 75 |||||||||||||| Sbjct 7148 CCTGTTATTGCCTC 7135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794423536032