Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq36124 399 4e-109 seq19828 383 3e-104 seq554 217 3e-54 seq275837 105 1e-20 >seq36124 Length=1942 Score = 399 bits (442), Expect = 4e-109 Identities = 265/293 (90%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||||||||||||||||||||||||||||| Sbjct 1271 TACTAGGTTGAATTACTATTGCGAC-ATTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1213 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 1212 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1153 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1152 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1093 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1092 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1033 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||| | | || |||||||||||||||||||| |||||| |||| |||||| Sbjct 1032 TAAATTCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 980 >seq19828 Length=5530 Score = 383 bits (424), Expect = 3e-104 Identities = 263/294 (89%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 341 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 283 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 282 TGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 223 Query 121 ATTCTGCTTCGGTATG-ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| ||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct 222 ATTCTGCTTCACAATGGATAGGAAGAGCCGACATCAAAGGATCAAAAAGCAACGTCACTA 163 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 162 TGAATGCTTGGCTGCCATAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCC 103 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||||| | | || |||||||||||||||||||| |||||| ||| |||||| Sbjct 102 TTAAATTCCAAAGGTCTAAAGGATCGATAGGCCACGCTTTCACAGTTAGTATTC 49 >seq554 Length=114263 Score = 217 bits (240), Expect = 3e-54 Identities = 154/175 (88%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 80455 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 80513 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || ||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 80514 CGAATGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 80573 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTC 175 |||||||||| |||||||||| |||| |||||||||||||||||||||||||| Sbjct 80574 ATTCTGCTTCATAATGATAGGAAAAGCCAACATCGAAGGATCAAAAAGCAACGTC 80628 >seq275837 Length=211 Score = 105 bits (116), Expect = 1e-20 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||||||||||||||||||||||||||||| Sbjct 128 TACTAGGTTGAATTACTATTGCGAC-ATTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 186 Query 61 TGACGGTCTAAACCCAGCTCACGTT 85 |||||||||||||||||||||||| Sbjct 187 CGACGGTCTAAACCCAGCTCACGTT 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851769541632