Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq1861 156 8e-36
seq9685 143 5e-32
seq750 141 2e-31
seq2006 129 1e-27
seq7886 123 5e-26
seq2890 96.9 7e-18
>seq1861
Length=62895
Score = 156 bits (172), Expect = 8e-36
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| | |||| | |||||| ||||||| |||||||||| |||| ||||||
Sbjct 27010 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGC 26951
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | || ||| | || | | |||||||||||| |||||
Sbjct 26950 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 26892
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | |||| |||||||| ||||||| | |||| ||||| | ||
Sbjct 26891 GCTTGACTGCAAGACCCACCAGTCGAGCAGGGAGGAAAGTCTGCCTTAGTGATCTGACGA 26832
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 26831 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 26782
>seq9685
Length=15958
Score = 143 bits (158), Expect = 5e-32
Identities = 109/129 (84%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | ||| ||||||||||||||||
Sbjct 3814 AGTGCAAAGGCAGAAGGGAGGTTGACTGCAAGACCCACCTGTCGAGCAGGGACGAAAGTC 3755
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| |||||| || ||||| |||| |||||| ||||||||||| |||
Sbjct 3754 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACT 3695
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 3694 CTAGGGATA 3686
>seq750
Length=101112
Score = 141 bits (156), Expect = 2e-31
Identities = 171/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| | |||| | |||||| ||||||| |||||||||| |||| |||||
Sbjct 68788 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATTGAGGC 68847
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| |||| | |||| | || || | || | | |||||||||||| |||||
Sbjct 68848 GTGTAAAGGTTTCCTCGGGCCAGACAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 68906
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | || || ||||||||||||||| |||| ||||||| |||
Sbjct 68907 GCTTGACTGCAAGACCCACCCATCGAGTAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 68966
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||| ||| ||||||||||| ||| || ||||||
Sbjct 68967 TGCAGAGTGGAAGGGCCGTCACTCAACGGATAAAAGTTACTCTAGGGATA 69016
>seq2006
Length=59971
Score = 129 bits (142), Expect = 1e-27
Identities = 168/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| | | || | |||||| ||||| | ||||| |||| | || ||||||
Sbjct 45757 GGGACATTCTTAGGTAGACAGTTTCTATGGGGTGTAGGCCTCTCAAAAGGAAATGGAGGC 45816
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||||| || ||| | || | | |||||||||||| || ||
Sbjct 45817 GTGCAAAGGTTTCCTCAGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAAGGA 45875
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| || ||||| ||||||||| |||| ||||||| | |
Sbjct 45876 GCTTGACTGCAAGACCCACCCGTCGAGTAGGGAAGAAAGTCGGCCTTAGTGATCCGACAG 45935
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| || |||||||| | ||||||||| ||| || ||||||
Sbjct 45936 TGCCGAGTGGAAGGGTCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 45985
>seq7886
Length=19900
Score = 123 bits (136), Expect = 5e-26
Identities = 143/190 (75%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 151 TCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC 210
||||||| ||||||||||| ||||| | |||| | | || ||| | || | |
Sbjct 7753 TCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCTAGACGGAGATTG-GCCCTC 7811
Query 211 -AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269
|||||||||||| ||||| | |||| ||| | |||| | ||| |||||||||||||||
Sbjct 7812 GAGTGCAAAGGCAGAAGGGAGCTTGATTGCAAAACCCACCTGTCGAGCAGGGACGAAAGT 7871
Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
|| |||| |||||| ||| |||| ||||| ||| ||| ||| | ||||||||| |||
Sbjct 7872 TGGCCTTAGTGATCCAATGGTACTGAGTGGAAGGGCAGTCACTCAATGGATAAAAGTTAC 7931
Query 330 CCTGGGGATA 339
|| ||||||
Sbjct 7932 TCTAGGGATA 7941
>seq2890
Length=47526
Score = 96.9 bits (106), Expect = 7e-18
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 213 TGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGG 272
|||||||||||||||| | || ||||| | |||| | | ||| || |||||||||
Sbjct 31240 TGCAAAGGCAAAAGGGAGCTTAACTGCAAGACCCACCCATTGAGCTAGG--GAAAGTCGG 31183
Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332
|||| ||||||| ||||||||| |||| ||| | |||| || |||||||| ||| ||
Sbjct 31182 CCTTAGTGATCCGACGGTGCTGAGGGGAAGGGCTATTGCTCAACAGATAAAAGTTACTCT 31123
Query 333 GGGGATA 339
||||||
Sbjct 31122 AGGGATA 31116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 979375465472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |