Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1861 156 8e-36 seq9685 143 5e-32 seq750 141 2e-31 seq2006 129 1e-27 seq7886 123 5e-26 seq2890 96.9 7e-18 >seq1861 Length=62895 Score = 156 bits (172), Expect = 8e-36 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| |||| |||||| Sbjct 27010 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGC 26951 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 26950 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 26892 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | |||| |||||||| ||||||| | |||| ||||| | || Sbjct 26891 GCTTGACTGCAAGACCCACCAGTCGAGCAGGGAGGAAAGTCTGCCTTAGTGATCTGACGA 26832 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 26831 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 26782 >seq9685 Length=15958 Score = 143 bits (158), Expect = 5e-32 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 3814 AGTGCAAAGGCAGAAGGGAGGTTGACTGCAAGACCCACCTGTCGAGCAGGGACGAAAGTC 3755 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||||| |||||| || ||||| |||| |||||| ||||||||||| ||| Sbjct 3754 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACT 3695 Query 331 CTGGGGATA 339 || |||||| Sbjct 3694 CTAGGGATA 3686 >seq750 Length=101112 Score = 141 bits (156), Expect = 2e-31 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | |||| | |||||| ||||||| |||||||||| |||| ||||| Sbjct 68788 GGGACATTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATTGAGGC 68847 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | |||| | |||| | || || | || | | |||||||||||| ||||| Sbjct 68848 GTGTAAAGGTTTCCTCGGGCCAGACAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 68906 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | || || ||||||||||||||| |||| ||||||| ||| Sbjct 68907 GCTTGACTGCAAGACCCACCCATCGAGTAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 68966 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||| ||| ||||||||||| ||| || |||||| Sbjct 68967 TGCAGAGTGGAAGGGCCGTCACTCAACGGATAAAAGTTACTCTAGGGATA 69016 >seq2006 Length=59971 Score = 129 bits (142), Expect = 1e-27 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | | || | |||||| ||||| | ||||| |||| | || |||||| Sbjct 45757 GGGACATTCTTAGGTAGACAGTTTCTATGGGGTGTAGGCCTCTCAAAAGGAAATGGAGGC 45816 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||||| || ||| | || | | |||||||||||| || || Sbjct 45817 GTGCAAAGGTTTCCTCAGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAAGGA 45875 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| || ||||| ||||||||| |||| ||||||| | | Sbjct 45876 GCTTGACTGCAAGACCCACCCGTCGAGTAGGGAAGAAAGTCGGCCTTAGTGATCCGACAG 45935 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| || |||||||| | ||||||||| ||| || |||||| Sbjct 45936 TGCCGAGTGGAAGGGTCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 45985 >seq7886 Length=19900 Score = 123 bits (136), Expect = 5e-26 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 151 TCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC 210 ||||||| ||||||||||| ||||| | |||| | | || ||| | || | | Sbjct 7753 TCCCAAAAGGTAACGGAGGCATGCAAAGGTTTCCTCGGGCTAGACGGAGATTG-GCCCTC 7811 Query 211 -AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGT 269 |||||||||||| ||||| | |||| ||| | |||| | ||| ||||||||||||||| Sbjct 7812 GAGTGCAAAGGCAGAAGGGAGCTTGATTGCAAAACCCACCTGTCGAGCAGGGACGAAAGT 7871 Query 270 CGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 || |||| |||||| ||| |||| ||||| ||| ||| ||| | ||||||||| ||| Sbjct 7872 TGGCCTTAGTGATCCAATGGTACTGAGTGGAAGGGCAGTCACTCAATGGATAAAAGTTAC 7931 Query 330 CCTGGGGATA 339 || |||||| Sbjct 7932 TCTAGGGATA 7941 >seq2890 Length=47526 Score = 96.9 bits (106), Expect = 7e-18 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 213 TGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGG 272 |||||||||||||||| | || ||||| | |||| | | ||| || ||||||||| Sbjct 31240 TGCAAAGGCAAAAGGGAGCTTAACTGCAAGACCCACCCATTGAGCTAGG--GAAAGTCGG 31183 Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 |||| ||||||| ||||||||| |||| ||| | |||| || |||||||| ||| || Sbjct 31182 CCTTAGTGATCCGACGGTGCTGAGGGGAAGGGCTATTGCTCAACAGATAAAAGTTACTCT 31123 Query 333 GGGGATA 339 |||||| Sbjct 31122 AGGGATA 31116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979375465472