Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq28409 109 6e-22 seq750 109 6e-22 seq2006 98.7 1e-18 seq1861 86.0 7e-15 seq10350 84.2 2e-14 seq22152 82.4 8e-14 >seq28409 Length=2808 Score = 109 bits (120), Expect = 6e-22 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 27 GTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCT 86 |||||| |||| || |||| || |||||||||| || | | |||||||||||| Sbjct 2319 GTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACTGAGC- 2377 Query 87 CACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGAC 145 | | | |||||||| ||| | |||||||||||||||||||||||||| Sbjct 2378 CTCTCTCTGAGACAGTGCCCAGATCGTTACGTCTTTCGTGCAGGTCGGAACTTACCCGAC 2437 Query 146 AAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||| ||||||||||||||| Sbjct 2438 AAGGAATTTCGCGACCTTAGGACCGTTA 2465 >seq750 Length=101112 Score = 109 bits (120), Expect = 6e-22 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | || |||| || |||||||||| || | | ||||||| || Sbjct 68628 GGGTCTTTCTGTCCAAGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCAAG 68569 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 || ||||||| ||| || ||||||| ||||||||||||||||| Sbjct 68568 CTTCTCTCCGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCGA 68509 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 68508 CAAGGAATTTCGCTACCTTAGGACCGTTA 68480 >seq2006 Length=59971 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| || Sbjct 45597 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCAAG 45538 Query 85 CTCACGGT-TGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||| || ||| || ||||||| |||||||||||||| | Sbjct 45537 C-CTCTCTCTGAGATAGTGCCCAAATCGTTACTCCTTTCGTGCGGGTCGGAACTTACCTG 45479 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 45478 ACAAGGAATTTCGCTACCTTAGGACCGTTA 45449 >seq1861 Length=62895 Score = 86.0 bits (94), Expect = 7e-15 Identities = 108/150 (72%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 27168 GGGTCTTTATGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 27227 Query 85 CTCACGGTTGA-GACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | | ||||| || || ||| ||| ||||||||||||||| Sbjct 27228 C-CTCTCTCCAAGACAGTGCCCAGATCGTTAGGCCTTTCATGCGAGTCGGAACTTACCCG 27286 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 27287 ACAAGGAATTTCGCTACCTTAGGACTGTTA 27316 >seq10350 Length=14826 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||| Sbjct 4211 TACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAGTT 4152 Query 173 A 173 | Sbjct 4151 A 4151 >seq22152 Length=4504 Score = 82.4 bits (90), Expect = 8e-14 Identities = 94/128 (73%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || | |||| || || | | ||||||||||| || || | ||||||| Sbjct 641 GGTACTCCGTGTCTTTACTGAGAATTCAATTTCACTG-GC-CATGTCGGAGACAGCGAGG 584 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||||| |||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 583 CAGTCGTTACACTATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCGCTACCTTAG 524 Query 166 GACCGTTA 173 ||| |||| Sbjct 523 GACAGTTA 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545567970528