Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 214 4e-53
seq3447 194 4e-47
seq3132 192 1e-46
seq12648 156 9e-36
seq1 140 7e-31
seq3337 96.9 7e-18
seq158 89.7 1e-15
seq73673 86.0 1e-14
seq1316 82.4 2e-13
seq4303 80.6 6e-13
seq154166 73.4 8e-11
>seq4906
Length=31215
Score = 214 bits (236), Expect = 4e-53
Identities = 167/197 (85%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || |||||||||||||||
Sbjct 1855 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 1912
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct 1913 TTGAGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGT 1972
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| || |||
Sbjct 1973 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCAC 2032
Query 182 CAACTAGCTAATCCGAC 198
||||||||||||| |||
Sbjct 2033 CAACTAGCTAATCAGAC 2049
>seq3447
Length=41424
Score = 194 bits (214), Expect = 4e-47
Identities = 161/194 (83%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 5 ACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTG 64
|||| ||| || || ||| | | ||||||||||| || |||||||||||| |||||
Sbjct 11008 ACAACCCGTAGGCCATCTACCTC-CACGCGGCATTA-CTCCGTCAGGCTTTCGCACATTG 11065
Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
| || | |||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 11066 TGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGTG 11125
Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184
||||||||||| || ||| || ||| |||| |||||||||| ||| ||| | |||||||
Sbjct 11126 GCTGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGTAAGCTATTGCTTCACCAA 11185
Query 185 CTAGCTAATCCGAC 198
|||||||||| |||
Sbjct 11186 CTAGCTAATCAGAC 11199
Score = 138 bits (152), Expect = 2e-30
Identities = 189/262 (72%), Gaps = 13/262 (5%)
Strand=Plus/Plus
Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133
||||| ||||| |||| |||||||||||| |||||| ||| | |||||||| |||||||
Sbjct 7790 CCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCAT 7849
Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
|||||| |||||| ||| |||| | |||||||| ||| ||| |||||||||||| ||||
Sbjct 7850 CCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAAT 7909
Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253
| ||| | || | || | | || || | | ||| ||| || || |
Sbjct 7910 CAGACTCAAGCCCCTC------CTCGAG---CGGATTCCTCCT--TTTGCTCCTCAG--C 7956
Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGG 313
|| | ||||||||| |||||||| ||| | | || | |||||| ||| || |
Sbjct 7957 CTACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTTCTTACG 8016
Query 314 CATTACTCACCCGTCCGCCGCT 335
| ||||| ||||||||||| ||
Sbjct 8017 CGTTACTTACCCGTCCGCCACT 8038
>seq3132
Length=44694
Score = 192 bits (212), Expect = 1e-46
Identities = 159/190 (84%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA-TTGTCCA 68
||| || |||||| | | || ||||||||| || ||||||||||||||| ||| |
Sbjct 3228 CCGTAGGCCTTCTACCTC-CATGCGGCATTG-CTCCGTCAGGCTTTCGCCCAATTGCAGA 3285
Query 69 ATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTG 128
| |||||||||| |||||||| |||||||||||| || ||||||||| |||||||| |||
Sbjct 3286 AAATTCCCCACTACTGCCTCCAGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTG 3345
Query 129 ATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAG 188
||||||||||| |||||| ||| |||| ||||||||| ||| ||| |||||||||||||
Sbjct 3346 ATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGCTATTGCCTCACCAACTAG 3405
Query 189 CTAATCCGAC 198
|||||| |||
Sbjct 3406 CTAATCAGAC 3415
>seq12648
Length=11425
Score = 156 bits (172), Expect = 9e-36
Identities = 118/139 (85%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119
|||||| || ||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920
Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179
|||| |||||||| |||| |||||| ||| |||| | |||||||| ||| ||| ||||
Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860
Query 180 ACCAACTAGCTAATCCGAC 198
||||||||||||||| |||
Sbjct 859 ACCAACTAGCTAATCAGAC 841
>seq1
Length=548636
Score = 140 bits (154), Expect = 7e-31
Identities = 106/124 (85%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130
||||||||||||| ||||| |||||||||||| | |||||||||| |||||||| |||||
Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057
Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190
||||||||| ||||| | |||| || |||||| ||| ||| |||||||||||||||
Sbjct 27058 CATCCTCTCGGACCA-ACATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116
Query 191 AATC 194
||||
Sbjct 27117 AATC 27120
>seq3337
Length=42490
Score = 96.9 bits (106), Expect = 7e-18
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182
|| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||||
Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973
Query 183 AACTAGCTAATCCGAC 198
|||||||||||| |||
Sbjct 6972 AACTAGCTAATCAGAC 6957
>seq158
Length=172821
Score = 89.7 bits (98), Expect = 1e-15
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190
|||||||||||||||| ||| |||| |||||||||| ||| ||| |||||||||||||||
Sbjct 53423 CATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 53364
Query 191 AATCCGA 197
|||| ||
Sbjct 53363 AATCAGA 53357
>seq73673
Length=787
Score = 86.0 bits (94), Expect = 1e-14
Identities = 74/88 (84%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| || ||| |||| ||||||| |||||||||
Sbjct 702 CTTTACAAGCGGCATTGCCCTTCTT-CACTCAAGCGATATTG-CTGGATCGGGCTTTCGC 759
Query 59 CCATTGTCCAATATTCCCCACTGCTGCC 86
||||||||||| ||||||||||||||||
Sbjct 760 CCATTGTCCAAGATTCCCCACTGCTGCC 787
>seq1316
Length=76941
Score = 82.4 bits (90), Expect = 2e-13
Identities = 66/80 (83%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174
||||| || || ||||||||||||| ||||| ||| |||| || | ||||| ||| |||
Sbjct 6708 TTCCAATGAGATTGATCATCCTCTCGAACCAGCTACTGATCATCACATTGGTAAGCTATT 6767
Query 175 ACCTCACCAACTAGCTAATC 194
||||||||||||||| |||
Sbjct 6768 GCCTCACCAACTAGCTCATC 6787
>seq4303
Length=34690
Score = 80.6 bits (88), Expect = 6e-13
Identities = 53/59 (90%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135
||||||||||||| |||||||| ||| |||||||||| | |||||||| ||||||||||
Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033
>seq154166
Length=314
Score = 73.4 bits (80), Expect = 8e-11
Identities = 64/80 (80%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174
||||| || | ||||||||||||| ||||| || |||| || | ||||| ||| |||
Sbjct 82 TTCCAATGAGGTTGATCATCCTCTCGAACCAGCTATTGATCATCACATTGGTAAGCTATT 141
Query 175 ACCTCACCAACTAGCTAATC 194
||||||||||||||| |||
Sbjct 142 GCCTCACCAACTAGCTCATC 161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068699612160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |