Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4906 214 4e-53 seq3447 194 4e-47 seq3132 192 1e-46 seq12648 156 9e-36 seq1 140 7e-31 seq3337 96.9 7e-18 seq158 89.7 1e-15 seq73673 86.0 1e-14 seq1316 82.4 2e-13 seq4303 80.6 6e-13 seq154166 73.4 8e-11 >seq4906 Length=31215 Score = 214 bits (236), Expect = 4e-53 Identities = 167/197 (85%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 1855 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 1912 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||| ||||| ||||| Sbjct 1913 TTGAGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGT 1972 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| || ||| Sbjct 1973 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCAC 2032 Query 182 CAACTAGCTAATCCGAC 198 ||||||||||||| ||| Sbjct 2033 CAACTAGCTAATCAGAC 2049 >seq3447 Length=41424 Score = 194 bits (214), Expect = 4e-47 Identities = 161/194 (83%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 5 ACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTG 64 |||| ||| || || ||| | | ||||||||||| || |||||||||||| ||||| Sbjct 11008 ACAACCCGTAGGCCATCTACCTC-CACGCGGCATTA-CTCCGTCAGGCTTTCGCACATTG 11065 Query 65 TCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 | || | |||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 11066 TGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGTG 11125 Query 125 ACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAA 184 ||||||||||| || ||| || ||| |||| |||||||||| ||| ||| | ||||||| Sbjct 11126 GCTGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGTAAGCTATTGCTTCACCAA 11185 Query 185 CTAGCTAATCCGAC 198 |||||||||| ||| Sbjct 11186 CTAGCTAATCAGAC 11199 Score = 138 bits (152), Expect = 2e-30 Identities = 189/262 (72%), Gaps = 13/262 (5%) Strand=Plus/Plus Query 74 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 ||||| ||||| |||| |||||||||||| |||||| ||| | |||||||| ||||||| Sbjct 7790 CCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCAT 7849 Query 134 CCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||||| |||||| ||| |||| | |||||||| ||| ||| |||||||||||| |||| Sbjct 7850 CCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAAT 7909 Query 194 CCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGAC 253 | ||| | || | || | | || || | | ||| ||| || || | Sbjct 7910 CAGACTCAAGCCCCTC------CTCGAG---CGGATTCCTCCT--TTTGCTCCTCAG--C 7956 Query 254 GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGG 313 || | ||||||||| |||||||| ||| | | || | |||||| ||| || | Sbjct 7957 CTACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTTCTTACG 8016 Query 314 CATTACTCACCCGTCCGCCGCT 335 | ||||| ||||||||||| || Sbjct 8017 CGTTACTTACCCGTCCGCCACT 8038 >seq3132 Length=44694 Score = 192 bits (212), Expect = 1e-46 Identities = 159/190 (84%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA-TTGTCCA 68 ||| || |||||| | | || ||||||||| || ||||||||||||||| ||| | Sbjct 3228 CCGTAGGCCTTCTACCTC-CATGCGGCATTG-CTCCGTCAGGCTTTCGCCCAATTGCAGA 3285 Query 69 ATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTG 128 | |||||||||| |||||||| |||||||||||| || ||||||||| |||||||| ||| Sbjct 3286 AAATTCCCCACTACTGCCTCCAGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTG 3345 Query 129 ATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAG 188 ||||||||||| |||||| ||| |||| ||||||||| ||| ||| ||||||||||||| Sbjct 3346 ATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGCTATTGCCTCACCAACTAG 3405 Query 189 CTAATCCGAC 198 |||||| ||| Sbjct 3406 CTAATCAGAC 3415 >seq12648 Length=11425 Score = 156 bits (172), Expect = 9e-36 Identities = 118/139 (85%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 |||| |||||||| |||| |||||| ||| |||| | |||||||| ||| ||| |||| Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860 Query 180 ACCAACTAGCTAATCCGAC 198 ||||||||||||||| ||| Sbjct 859 ACCAACTAGCTAATCAGAC 841 >seq1 Length=548636 Score = 140 bits (154), Expect = 7e-31 Identities = 106/124 (85%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 ||||||||||||| ||||| |||||||||||| | |||||||||| |||||||| ||||| Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||||| ||||| | |||| || |||||| ||| ||| ||||||||||||||| Sbjct 27058 CATCCTCTCGGACCA-ACATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116 Query 191 AATC 194 |||| Sbjct 27117 AATC 27120 >seq3337 Length=42490 Score = 96.9 bits (106), Expect = 7e-18 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 123 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACC 182 || |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||| Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973 Query 183 AACTAGCTAATCCGAC 198 |||||||||||| ||| Sbjct 6972 AACTAGCTAATCAGAC 6957 >seq158 Length=172821 Score = 89.7 bits (98), Expect = 1e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 |||||||||||||||| ||| |||| |||||||||| ||| ||| ||||||||||||||| Sbjct 53423 CATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 53364 Query 191 AATCCGA 197 |||| || Sbjct 53363 AATCAGA 53357 >seq73673 Length=787 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| || ||| |||| ||||||| ||||||||| Sbjct 702 CTTTACAAGCGGCATTGCCCTTCTT-CACTCAAGCGATATTG-CTGGATCGGGCTTTCGC 759 Query 59 CCATTGTCCAATATTCCCCACTGCTGCC 86 ||||||||||| |||||||||||||||| Sbjct 760 CCATTGTCCAAGATTCCCCACTGCTGCC 787 >seq1316 Length=76941 Score = 82.4 bits (90), Expect = 2e-13 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 ||||| || || ||||||||||||| ||||| ||| |||| || | ||||| ||| ||| Sbjct 6708 TTCCAATGAGATTGATCATCCTCTCGAACCAGCTACTGATCATCACATTGGTAAGCTATT 6767 Query 175 ACCTCACCAACTAGCTAATC 194 ||||||||||||||| ||| Sbjct 6768 GCCTCACCAACTAGCTCATC 6787 >seq4303 Length=34690 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 ||||||||||||| |||||||| ||| |||||||||| | |||||||| |||||||||| Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033 >seq154166 Length=314 Score = 73.4 bits (80), Expect = 8e-11 Identities = 64/80 (80%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 115 TTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT 174 ||||| || | ||||||||||||| ||||| || |||| || | ||||| ||| ||| Sbjct 82 TTCCAATGAGGTTGATCATCCTCTCGAACCAGCTATTGATCATCACATTGGTAAGCTATT 141 Query 175 ACCTCACCAACTAGCTAATC 194 ||||||||||||||| ||| Sbjct 142 GCCTCACCAACTAGCTCATC 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068699612160