Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1861 232 2e-58 seq750 226 1e-56 seq2006 197 5e-48 seq137 136 1e-29 seq272 116 1e-23 seq10209 104 8e-20 seq4310 102 3e-19 seq4032 86.0 2e-14 seq14636 80.6 1e-12 seq7720 78.8 3e-12 >seq1861 Length=62895 Score = 232 bits (256), Expect = 2e-58 Identities = 337/470 (72%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | ||| || |||| |||||| Sbjct 28396 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTATGGGTTCGAGTGGCATTTCAC 28455 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| ||||| || | | |||||| | ||| ||||| | ||||||| || Sbjct 28456 CCCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTAGGTTCAGACCTCCACTTAGT 28515 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 28516 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 28575 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| ||||||||||||||| |||| || || |||| Sbjct 28576 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTATGGCT---CCGGTGGGTTCCCTTAA 28628 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | || | |||||||||||||| |||||||| |||| | Sbjct 28629 CCAAGC--CACTGCCTATGAGTCACTGGCTCATTCTTCAATAGGCACGCGGTCA----GA 28682 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || || | | |||| || | ||| || | ||||||| || ||||||||| Sbjct 28683 GCC-------CAATGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 28735 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| | ||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 28736 TCCCCGATGGAGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 28795 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 28796 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 28845 >seq750 Length=101112 Score = 226 bits (250), Expect = 1e-56 Identities = 338/470 (72%), Gaps = 30/470 (6%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||||||| || |||||||||||||||| ||| | | | ||| || |||| ||||||| Sbjct 67393 CTGCACCTCAACGCATTTCGGGGAGAACTAGCCAGCTCTGGGTTCGAGTGGCATTTCACC 67334 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| ||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 67333 CCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT 67274 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGC 315 | |||| |||||| |||| |||||||||||||| | | ||||||||| | | | ||| Sbjct 67273 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCTAGGTTCGGGTCTATAAGCAGTGA 67214 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAA 370 || | ||||||| ||||||||||||||| |||| | ||| |||| Sbjct 67213 CAAT----TGCCCTATGAAGACTCGCTTTCGCTATGGCT----CTGGTGGGTTCCCTTAA 67162 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| || | | || | | |||||||||||| |||||||| || | | Sbjct 67161 CCAAGC--CACTACCTATGAGTCACCGACTCATTCTTCAACAGGCACGCGGT----TAGA 67108 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || || || ||| ||| || ||| || | ||||||| || ||||||||| Sbjct 67107 GCC--CAATGC---TCA--TCCCACTACTTGGGAGCTTAAGGTTTCATGTTCTATTTCAC 67055 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| | |||||| ||||||||||||| | | | |||||||||||| | Sbjct 67054 TCCCCGATGGGGGTTC-ATTCACCCTTCCCTCACGGTAGTACTTCACTATCGGTCACCCA 66996 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | ||||||||||| ||| || Sbjct 66995 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGAGATTCCA 66946 >seq2006 Length=59971 Score = 197 bits (218), Expect = 5e-48 Identities = 323/459 (70%), Gaps = 25/459 (5%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| || ||||||||||||||||||||| | | | | ||| || |||| ||||||| Sbjct 44365 CTGCGCCCTAATGCATTTCGGGGAGAACCAACCAACTCTGGGTTCGAGTGGCATTTCACC 44306 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| ||||| || | | |||||| | ||| |||| | | ||||| || Sbjct 44305 CCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCGGTTTTGACGTCCACTTAGTT 44246 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGC 315 | |||| |||||| |||| |||||||||||||| | ||||||||| | | | ||| Sbjct 44245 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCTGTAAGCAGTGA 44186 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAAC 371 | | |||||| |||||||||||| || |||| || || | |||| Sbjct 44185 CGATTT----CCCTATGAAGACTCGCTTTCGTTATGGCT---CCGGTGGGTTCCCTTAAC 44133 Query 372 CTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 | || || | | | || | ||||||||||||| |||||||| ||||| | Sbjct 44132 CAAGCCACTCC-CTATGAGTCACCGGCTCATTCTTCAGCAGGCACGCGGTCACAGC---C 44077 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 | || || |||| | || | ||| || | |||||| || ||||||||||| Sbjct 44076 C---AATGCTCTTC-----CCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTC 44025 Query 492 CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 ||| |||||| |||||||| ||||||||||||||| | | ||||| |||||| ||| Sbjct 44024 CCCAATAGGGGTTTTTTTCACCCTTCCCTCACGGTACTACTTCACTATCTGTCACCCAGG 43965 Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 ||||||||| |||| |||||||| | ||||||||| Sbjct 43964 AGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACAC 43926 >seq137 Length=177946 Score = 136 bits (150), Expect = 1e-29 Identities = 291/423 (69%), Gaps = 35/423 (8%) Strand=Plus/Plus Query 150 GCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGG 209 |||||||| ||||||||||||| | ||| || |||| ||||||| ||| ||||| Sbjct 63446 GCATTTCGAGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTCACCTCTAACCACAAC 63505 Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269 | |||| || | | |||||| | ||| ||||| | ||||||| || | || | |||| Sbjct 63506 T-ATCCACTGATTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGTTTCACTTGTGCTT 63564 Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCC 327 || || | ||||||||||||| | ||||||| | | | | ||| || | ||| Sbjct 63565 CATCCCGGTCATGGATAGATCATCCAGGTTCGGGTCCATAAGCAGTGACAAT----TGCC 63620 Query 328 CTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAACCTCGCGACACAA 383 |||| |||||||||||||| ||||| || || |||||| || ||| Sbjct 63621 CTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCTTTAACCAAGC--CACTG 63675 Query 384 CGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCAC 442 | | || || | | |||||||||||| |||||||| || | | || || | | Sbjct 63676 CCTATAAGTC-CCGTCTCATTCTTCAACAGGCACGCAGT----TAGAGCCGAA----CGC 63726 Query 443 TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGG 502 | |||| || | ||| || | |||||| || ||||||||||||| ||| Sbjct 63727 T---CCTCCCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTCCCTAATGTGGG 63783 Query 503 TACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGC 562 | ||||||||| ||||||||||||| | |||| ||||||| | ||||||||| || Sbjct 63784 TTCTTTTCACCCTTCCCTCACGGTA-----TCACTATAGGTCACCCATGAGTATTTA-GC 63837 Query 563 TTA 565 ||| Sbjct 63838 TTA 63840 >seq272 Length=148728 Score = 116 bits (128), Expect = 1e-23 Identities = 210/301 (70%), Gaps = 22/301 (7%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 11370 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 11311 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| | |||| || | | |||||| | | | |||| || ||||||| || Sbjct 11310 CCCTAACCACAACTTATCCGCTGATTCTTCAACATCAATCGGTTAGGACCTCCACTTAGT 11251 Query 257 CTTACCCGCGCTTCAACCTG----CC----CATGGATAGATCACTTCGCTTCGGGTC--T 306 | |||| |||||| |||| || ||||||| |||||| | |||||||| | Sbjct 11250 TTCACCCAAGCTTCATCCTGGTCTCCTGGTCATGGATGGATCACCCAGGTTCGGGTCCAT 11191 Query 307 TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG-- 364 || ||| || | | ||||| |||||||||| |||| ||| || | | Sbjct 11190 TGGCAGTGACAAT----TGTCCTATGAAGACTCGCTTTTGCTATTGCT--CCGGTAGGTT 11137 Query 365 -GGTTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTC 422 |||||| || ||| | | | |||| |||| ||||||||| |||||||| ||| Sbjct 11136 CCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCTTATTCTTCAACAGGCACGCGGTC 11079 Query 423 A 423 | Sbjct 11078 A 11078 >seq10209 Length=15052 Score = 104 bits (114), Expect = 8e-20 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||||||||| || | ||||||||||||| ||||| ||||||||| ||| ||||| ||| Sbjct 11914 ATGGTTTCATGTTCAATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCACTCACAGTA 11973 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || | | ||||||| |||| ||||||||||| ||| |||||||| | |||||| Sbjct 11974 CTACTTCACTATCGGCCACCCAGGAGTATTTAATCTTGCAAGGTGGTCCTTGCTGATTCA 12033 Query 588 CA 589 || Sbjct 12034 CA 12035 >seq4310 Length=34640 Score = 102 bits (112), Expect = 3e-19 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || |||||||||||| || ||||| ||||||||| ||||||||| ||||| Sbjct 20680 GGTTTCATGTTCTATTTCACTCCTCGATGGGGGTTCTTTTCACCCTTCCCTCACAGTACT 20621 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | |||| ||||| |||||||||||| ||| |||||||| | |||||||| Sbjct 20620 ACTTCACTATTGGTCATTCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 20561 Query 590 C 590 | Sbjct 20560 C 20560 >seq4032 Length=36571 Score = 86.0 bits (94), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269 |||||| || | | |||||| | ||| ||||||| ||||||| || | |||| |||| Sbjct 23196 TCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTT 23137 Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCC 327 || |||| | |||||||||||| | ||||||| | | | | ||| || | ||| Sbjct 23136 CATCCTGGTCGTGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAAT----TGCC 23081 Query 328 CTATTCGGACTCGCTTTCGCTACGGCT 354 |||| |||||||||||||||||||| Sbjct 23080 CTATGAAGACTCGCTTTCGCTACGGCT 23054 >seq14636 Length=9244 Score = 80.6 bits (88), Expect = 1e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 || |||||||||| |||||||||| ||| |||||||||||| |||| || |||||||| Sbjct 7314 CTATTCACCTTTCTCTCACGGTACCTGTACGCTATCGGTCATTGAGGAATACTTAGGCTT 7255 Query 565 AACGGGTGGTCC 576 | ||||||||| Sbjct 7254 AGAGGGTGGTCC 7243 >seq7720 Length=20388 Score = 78.8 bits (86), Expect = 3e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || ||||||||||||||| ||||| |||||||| ||||||||||||||| Sbjct 12786 GGTTTCATGTTCTATTTCACTCCCCGATGGGGGTT-TTTTCACCCTTCCCTCACGGTACT 12844 Query 530 TGTCCGCTATCGGTC 544 | | ||||||||| Sbjct 12845 ACTTCACTATCGGTC 12859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1812004118528