Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq1861 232 2e-58
seq750 226 1e-56
seq2006 197 5e-48
seq137 136 1e-29
seq272 116 1e-23
seq10209 104 8e-20
seq4310 102 3e-19
seq4032 86.0 2e-14
seq14636 80.6 1e-12
seq7720 78.8 3e-12
>seq1861
Length=62895
Score = 232 bits (256), Expect = 2e-58
Identities = 337/470 (72%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | ||| || |||| ||||||
Sbjct 28396 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTATGGGTTCGAGTGGCATTTCAC 28455
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| ||||| || | | |||||| | ||| ||||| | ||||||| ||
Sbjct 28456 CCCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTAGGTTCAGACCTCCACTTAGT 28515
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 28516 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 28575
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| ||||||||||||||| |||| || || ||||
Sbjct 28576 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTATGGCT---CCGGTGGGTTCCCTTAA 28628
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | || | |||||||||||||| |||||||| |||| |
Sbjct 28629 CCAAGC--CACTGCCTATGAGTCACTGGCTCATTCTTCAATAGGCACGCGGTCA----GA 28682
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| || | | |||| || | ||| || | ||||||| || |||||||||
Sbjct 28683 GCC-------CAATGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 28735
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| | ||| ||||||||| ||||||||||||||| | | |||||||||||| |
Sbjct 28736 TCCCCGATGGAGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 28795
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 28796 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 28845
>seq750
Length=101112
Score = 226 bits (250), Expect = 1e-56
Identities = 338/470 (72%), Gaps = 30/470 (6%)
Strand=Plus/Minus
Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197
|||||||| || |||||||||||||||| ||| | | | ||| || |||| |||||||
Sbjct 67393 CTGCACCTCAACGCATTTCGGGGAGAACTAGCCAGCTCTGGGTTCGAGTGGCATTTCACC 67334
Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257
|||| ||||| ||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 67333 CCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT 67274
Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGC 315
| |||| |||||| |||| |||||||||||||| | | ||||||||| | | | |||
Sbjct 67273 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCTAGGTTCGGGTCTATAAGCAGTGA 67214
Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAA 370
|| | ||||||| ||||||||||||||| |||| | ||| ||||
Sbjct 67213 CAAT----TGCCCTATGAAGACTCGCTTTCGCTATGGCT----CTGGTGGGTTCCCTTAA 67162
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| || | | || | | |||||||||||| |||||||| || | |
Sbjct 67161 CCAAGC--CACTACCTATGAGTCACCGACTCATTCTTCAACAGGCACGCGGT----TAGA 67108
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| || || ||| ||| || ||| || | ||||||| || |||||||||
Sbjct 67107 GCC--CAATGC---TCA--TCCCACTACTTGGGAGCTTAAGGTTTCATGTTCTATTTCAC 67055
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| | |||||| ||||||||||||| | | | |||||||||||| |
Sbjct 67054 TCCCCGATGGGGGTTC-ATTCACCCTTCCCTCACGGTAGTACTTCACTATCGGTCACCCA 66996
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | ||||||||||| ||| ||
Sbjct 66995 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGAGATTCCA 66946
>seq2006
Length=59971
Score = 197 bits (218), Expect = 5e-48
Identities = 323/459 (70%), Gaps = 25/459 (5%)
Strand=Plus/Minus
Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197
|||| || ||||||||||||||||||||| | | | | ||| || |||| |||||||
Sbjct 44365 CTGCGCCCTAATGCATTTCGGGGAGAACCAACCAACTCTGGGTTCGAGTGGCATTTCACC 44306
Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257
|||| ||||| ||||| || | | |||||| | ||| |||| | | ||||| ||
Sbjct 44305 CCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCGGTTTTGACGTCCACTTAGTT 44246
Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGC 315
| |||| |||||| |||| |||||||||||||| | ||||||||| | | | |||
Sbjct 44245 TCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCTGTAAGCAGTGA 44186
Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAAC 371
| | |||||| |||||||||||| || |||| || || | ||||
Sbjct 44185 CGATTT----CCCTATGAAGACTCGCTTTCGTTATGGCT---CCGGTGGGTTCCCTTAAC 44133
Query 372 CTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431
| || || | | | || | ||||||||||||| |||||||| ||||| |
Sbjct 44132 CAAGCCACTCC-CTATGAGTCACCGGCTCATTCTTCAGCAGGCACGCGGTCACAGC---C 44077
Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491
| || || |||| | || | ||| || | |||||| || |||||||||||
Sbjct 44076 C---AATGCTCTTC-----CCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTC 44025
Query 492 CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551
||| |||||| |||||||| ||||||||||||||| | | ||||| |||||| |||
Sbjct 44024 CCCAATAGGGGTTTTTTTCACCCTTCCCTCACGGTACTACTTCACTATCTGTCACCCAGG 43965
Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590
||||||||| |||| |||||||| | |||||||||
Sbjct 43964 AGTATTTAGCCTTACAAGGTGGTCCTTGCTGATTCACAC 43926
>seq137
Length=177946
Score = 136 bits (150), Expect = 1e-29
Identities = 291/423 (69%), Gaps = 35/423 (8%)
Strand=Plus/Plus
Query 150 GCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGG 209
|||||||| ||||||||||||| | ||| || |||| ||||||| ||| |||||
Sbjct 63446 GCATTTCGAGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTCACCTCTAACCACAAC 63505
Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269
| |||| || | | |||||| | ||| ||||| | ||||||| || | || | ||||
Sbjct 63506 T-ATCCACTGATTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGTTTCACTTGTGCTT 63564
Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCC 327
|| || | ||||||||||||| | ||||||| | | | | ||| || | |||
Sbjct 63565 CATCCCGGTCATGGATAGATCATCCAGGTTCGGGTCCATAAGCAGTGACAAT----TGCC 63620
Query 328 CTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAACCTCGCGACACAA 383
|||| |||||||||||||| ||||| || || |||||| || |||
Sbjct 63621 CTATGAAGACTCGCTTTCGCTGCGGCT---CCGGTGGGTTCCTTTAACCAAGC--CACTG 63675
Query 384 CGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCAC 442
| | || || | | |||||||||||| |||||||| || | | || || | |
Sbjct 63676 CCTATAAGTC-CCGTCTCATTCTTCAACAGGCACGCAGT----TAGAGCCGAA----CGC 63726
Query 443 TTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGG 502
| |||| || | ||| || | |||||| || ||||||||||||| |||
Sbjct 63727 T---CCTCCCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTCCCTAATGTGGG 63783
Query 503 TACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGC 562
| ||||||||| ||||||||||||| | |||| ||||||| | ||||||||| ||
Sbjct 63784 TTCTTTTCACCCTTCCCTCACGGTA-----TCACTATAGGTCACCCATGAGTATTTA-GC 63837
Query 563 TTA 565
|||
Sbjct 63838 TTA 63840
>seq272
Length=148728
Score = 116 bits (128), Expect = 1e-23
Identities = 210/301 (70%), Gaps = 22/301 (7%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 11370 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 11311
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| | |||| || | | |||||| | | | |||| || ||||||| ||
Sbjct 11310 CCCTAACCACAACTTATCCGCTGATTCTTCAACATCAATCGGTTAGGACCTCCACTTAGT 11251
Query 257 CTTACCCGCGCTTCAACCTG----CC----CATGGATAGATCACTTCGCTTCGGGTC--T 306
| |||| |||||| |||| || ||||||| |||||| | |||||||| |
Sbjct 11250 TTCACCCAAGCTTCATCCTGGTCTCCTGGTCATGGATGGATCACCCAGGTTCGGGTCCAT 11191
Query 307 TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACG-- 364
|| ||| || | | ||||| |||||||||| |||| ||| || | |
Sbjct 11190 TGGCAGTGACAAT----TGTCCTATGAAGACTCGCTTTTGCTATTGCT--CCGGTAGGTT 11137
Query 365 -GGTTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTC 422
|||||| || ||| | | | |||| |||| ||||||||| |||||||| |||
Sbjct 11136 CCCTTAACCAAGC--CACTGCCTATGAGTCGCCGGCTTATTCTTCAACAGGCACGCGGTC 11079
Query 423 A 423
|
Sbjct 11078 A 11078
>seq10209
Length=15052
Score = 104 bits (114), Expect = 8e-20
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527
||||||||| || | ||||||||||||| ||||| ||||||||| ||| ||||| |||
Sbjct 11914 ATGGTTTCATGTTCAATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCACTCACAGTA 11973
Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587
|| | | ||||||| |||| ||||||||||| ||| |||||||| | ||||||
Sbjct 11974 CTACTTCACTATCGGCCACCCAGGAGTATTTAATCTTGCAAGGTGGTCCTTGCTGATTCA 12033
Query 588 CA 589
||
Sbjct 12034 CA 12035
>seq4310
Length=34640
Score = 102 bits (112), Expect = 3e-19
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||||||| || ||||| ||||||||| ||||||||| |||||
Sbjct 20680 GGTTTCATGTTCTATTTCACTCCTCGATGGGGGTTCTTTTCACCCTTCCCTCACAGTACT 20621
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| | |||| ||||| |||||||||||| ||| |||||||| | ||||||||
Sbjct 20620 ACTTCACTATTGGTCATTCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 20561
Query 590 C 590
|
Sbjct 20560 C 20560
>seq4032
Length=36571
Score = 86.0 bits (94), Expect = 2e-14
Identities = 109/147 (74%), Gaps = 6/147 (4%)
Strand=Plus/Minus
Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269
|||||| || | | |||||| | ||| ||||||| ||||||| || | |||| ||||
Sbjct 23196 TCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTT 23137
Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGCCACTCATACGCC 327
|| |||| | |||||||||||| | ||||||| | | | | ||| || | |||
Sbjct 23136 CATCCTGGTCGTGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAAT----TGCC 23081
Query 328 CTATTCGGACTCGCTTTCGCTACGGCT 354
|||| ||||||||||||||||||||
Sbjct 23080 CTATGAAGACTCGCTTTCGCTACGGCT 23054
>seq14636
Length=9244
Score = 80.6 bits (88), Expect = 1e-12
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564
|| |||||||||| |||||||||| ||| |||||||||||| |||| || ||||||||
Sbjct 7314 CTATTCACCTTTCTCTCACGGTACCTGTACGCTATCGGTCATTGAGGAATACTTAGGCTT 7255
Query 565 AACGGGTGGTCC 576
| |||||||||
Sbjct 7254 AGAGGGTGGTCC 7243
>seq7720
Length=20388
Score = 78.8 bits (86), Expect = 3e-12
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || ||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 12786 GGTTTCATGTTCTATTTCACTCCCCGATGGGGGTT-TTTTCACCCTTCCCTCACGGTACT 12844
Query 530 TGTCCGCTATCGGTC 544
| | |||||||||
Sbjct 12845 ACTTCACTATCGGTC 12859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1812004118528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |