Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1861 201 3e-49 seq750 176 1e-41 seq2006 161 2e-37 seq4310 138 3e-30 seq137 118 3e-24 seq10209 114 3e-23 seq3033 105 2e-20 seq7720 89.7 1e-15 seq4032 80.6 7e-13 seq272 75.2 3e-11 >seq1861 Length=62895 Score = 201 bits (222), Expect = 3e-49 Identities = 306/418 (73%), Gaps = 22/418 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | || |||||| ||| ||||| | |||||| ||||| | Sbjct 28462 CCACAACTCAT-CTGCTGA-TTCTTCAACATCAGTAGGTTCAGACCTCCACTTAGTT-TC 28518 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 28519 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 28574 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||| | |||| | ||| |||| | Sbjct 28575 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTATGGCTCCGGTGGGTTCCCTTAACCAA 28632 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||| ||| | |||| | ||| ||| |||| |||| ||||| Sbjct 28633 -GCCACTGCCTATGAGTCACTGGCTCATTCTTCAATAGGCACGCGGTCAGAGCCCAA--- 28688 Query 244 AGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || | |||||||||||| || |||||||||| | ||||||||||||||| | | Sbjct 28689 --TGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-G 28745 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||| || |||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 28746 AGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTA 28805 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 28806 GCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 28863 >seq750 Length=101112 Score = 176 bits (194), Expect = 1e-41 Identities = 301/418 (72%), Gaps = 23/418 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 67328 CCACAACTCAT-CTGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 67272 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| || | || ||||||||| | || Sbjct 67271 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCTAGGTT-CGGGTCTATAAGC-AGT 67216 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||| | ||| | ||| |||| | Sbjct 67215 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTATGGCTCTGGTGGGTTCCCTTAACCAA 67158 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 |||||| || |||| | ||| |||| | ||| ||| |||| || | ||||| Sbjct 67157 -GCCACTACCTATGAGTCACCGACTCATTCTTCAACAGGCACGCGGTTAGAGCCCAA--- 67102 Query 244 AGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 || | ||||||| |||| || || ||||||| | ||||||||||||||| | | Sbjct 67101 --TGCTCATCCCACTACTTGGGAGCTTAAGGTTTCATGTTCTATTTCACTCCCCGATG-G 67045 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||| || | || ||||||||||||| || |||||||||||||| ||| |||||||| Sbjct 67044 GGGTTCATT-CACCCTTCCCTCACGGTAGTACTTCACTATCGGTCACCCAGGAGTATTTA 66986 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||| | | |||||| | ||||| || | || | | || || | ||||||| Sbjct 66985 GCCTTGCAAGGTGGTCCTTGCTGATTCACACGAGATTCCACATGTCCCATGCTACTCG 66928 >seq2006 Length=59971 Score = 161 bits (178), Expect = 2e-37 Identities = 271/374 (72%), Gaps = 16/374 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | || |||||| |||||||| | | |||| ||||| | Sbjct 44300 CCACAACTCAT-CTGCTGA-TTCTTCAACATCAGTCGGTTTTGACGTCCACTTAGTT-TC 44244 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || ||||||| | | || Sbjct 44243 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCTGTAAGC-AGT 44188 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | ||||| |||||||||||| || || | |||| | ||| |||| | Sbjct 44187 GACGATTT-CCCTATGAAGACTCGCTTT-CGTTATGGCTCCGGTGGGTTCCCTTAACCAA 44130 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 |||||| || |||| | | | |||| | || ||| |||| ||||| ||| | Sbjct 44129 -GCCACTCCCTATGAGTCACCGGCTCATTCTTCAGCAGGCACGCGGTCACAGCCCAA--T 44073 Query 247 GGGCT-CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | || ||||||||||| || ||| |||||| | ||||||||||||||| | |||| Sbjct 44072 GCTCTTCCCACTGCTTGGGAGCTTACAGTTTCATGTTCTATTTCACTCCCCAATA-GGGG 44014 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 || ||||| || |||||||||||||||| ||||||||| |||| ||| ||||||||||| Sbjct 44013 TTTTTTTCACCCTTCCCTCACGGTACTACTTCACTATCTGTCACCCAGGAGTATTTAGCC 43954 Query 366 TTGGAGGATGGTCC 379 || | | |||||| Sbjct 43953 TTACAAGGTGGTCC 43940 >seq4310 Length=34640 Score = 138 bits (152), Expect = 3e-30 Identities = 134/171 (78%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || |||||||||| | ||||||||||||| | | |||||||| Sbjct 20702 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 20644 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||||||||| |||||| |||||||| ||||| |||| |||||||||||||| Sbjct 20643 TTTCACCCTTCCCTCACAGTACTACTTCACTATTGGTCATTCAGGAGTATTTAGCCTTGC 20584 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 | | |||||| | ||||| ||| || | |||| || | || |||| Sbjct 20583 AAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGTCCCATGCTCCTCG 20533 >seq137 Length=177946 Score = 118 bits (130), Expect = 3e-24 Identities = 240/341 (70%), Gaps = 24/341 (7%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||||| | |||||| ||||| | || ||| || || | Sbjct 63516 TTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGTT-TCACTTGTGCTT-CATCCCGGT 63573 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| || | || |||||| || | || ||| | |||||| |||| Sbjct 63574 CAT-GGATAGATCATCCAGGTT-CGGGTCCATAAGC-AGTGACAATT-GCCCTATGAAGA 63629 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 |||||||| |||| || |||| | ||| |||| | ||||||| ||||||| | Sbjct 63630 CTCGCTTT-CGCTGCGGCTCCGGTGGGTTCCTTTAACCAA-GCCACTGCCTATAAGTCCC 63687 Query 207 TGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCACTGCTTGT 263 | | |||| | ||| ||| ||||||| | || ||| ||||||||||||| Sbjct 63688 -GTCTCATTCTTCAACAGGCACGCAGTTAGAGCCGAACGCTC----CTCCCACTGCTTGG 63742 Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 || ||| |||||| | ||||||||||| |||| ||||||||||| || |||||| Sbjct 63743 GAGCTTACAGTTTCATGTTCTATTTCACT-CCCTAATGTGGGTTCTTTTCACCCTTCCCT 63801 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||| ||||||| ||||| || |||||||||| Sbjct 63802 CACGGTA-----TCACTATAGGTCACCCATGAGTATTTAGC 63837 >seq10209 Length=15052 Score = 114 bits (126), Expect = 3e-23 Identities = 104/130 (80%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 ||||||||||||| || || ||||||| | || |||||||||||| | |||||||| Sbjct 11894 CTCCCACTGCTTGGGAGCTTATGGTTTCATGTTCAATTTCACTCCCCGATG-GGGGTTCT 11952 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||| ||||| |||||| ||||||||||| || ||| |||||||| |||| Sbjct 11953 TTTCACCCTTCACTCACAGTACTACTTCACTATCGGCCACCCAGGAGTATTTAATCTTGC 12012 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 12013 AAGGTGGTCC 12022 >seq3033 Length=45737 Score = 105 bits (116), Expect = 2e-20 Identities = 207/291 (71%), Gaps = 20/291 (7%) Strand=Plus/Minus Query 44 CGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGC 103 |||||||| |||||| || || | |||||| ||| || |||| ||| ||||||||| | Sbjct 24694 CGGTTCGGACCTCCACTTTGTT-TCACCCAAGCTT-CATCCTGGTCAT-GGATAGATCAC 24638 Query 104 CCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTAC 163 || || | |||| || | | ||| | |||||| |||||||||||| | ||| Sbjct 24637 CCAAGTT-CAGGTCCATAAGCAAT-GACAATT-GCCCTATGAAGACTCGCTTT-CATTAC 24582 Query 164 GCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAA 221 |||| | ||| |||| | ||||||| || |||||| | | |||| | ||| Sbjct 24581 AGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAA 24523 Query 222 AAGGTACGCAGTCA---CCCAACAAAGTGGGC-TCCCACTGCTTGTACGCATACGGTTTC 277 ||| |||| |||| ||||| || | |||||||||||| || ||||||||| Sbjct 24522 CAGGCACGCGGTCAGAGCCCAA-----TGCTCCTCCCACTGCTTGCGAGCTTACGGTTTC 24468 Query 278 AGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 | | |||||| ||||||| | |||||||||||| || ||||||||||| Sbjct 24467 ATGTTCTATTGTACTCCCCGAT-GGGGGTTCTTTTCACCCTTCCCTCACGG 24418 >seq7720 Length=20388 Score = 89.7 bits (98), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 270 ACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGT 329 ||||||||| | ||||||||||||||| | |||||| ||||| || |||||||||||| Sbjct 12784 ACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTT-TTTTCACCCTTCCCTCACGGT 12841 Query 330 ACTAGTTCACTATCGGTC 347 |||| ||||||||||||| Sbjct 12842 ACTACTTCACTATCGGTC 12859 >seq4032 Length=36571 Score = 80.6 bits (88), Expect = 7e-13 Identities = 114/150 (76%), Gaps = 8/150 (5%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| ||||||||||| |||||| ||||| | |||||| | || Sbjct 23193 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAGC-TT 23137 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| | | ||||||||| ||| | |||||||| | | ||| ||| | ||| Sbjct 23136 CATCCTGGTCGT-GGATAGATCACCCAG-GTTCGGGTCCA-TAAGCAGTGAC-AATTGCC 23081 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCC 169 ||| ||||||||| |||||||||| |||| Sbjct 23080 CTATGAAGACTCGC-TTTCGCTACGGCTCC 23052 >seq272 Length=148728 Score = 75.2 bits (82), Expect = 3e-11 Identities = 191/276 (69%), Gaps = 20/276 (7%) Strand=Plus/Minus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| | |||||| || |||||| ||||| | |||||| ||| Sbjct 11294 TCCGCTGA-TTCTTCAACATCAATCGGTTAGGACCTCCACTTAGTT-TCACCCAAGCTT- 11238 Query 80 CAACCTG----CC----CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGAC 131 || |||| || ||| |||| |||| ||| | || |||||| ||| | || ||| Sbjct 11237 CATCCTGGTCTCCTGGTCAT-GGATGGATCACCCAGGTT-CGGGTCCATTGGC-AGTGAC 11181 Query 132 TAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGC 189 | | |||| ||||||||||||| |||| |||| || ||| |||| | || Sbjct 11180 AATT-GTCCTATGAAGACTCGCTTTT-GCTATTGCTCCGGTAGGTTCCCTTAACCAA-GC 11124 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||||| || |||||| | | ||| | ||| ||| |||| |||| ||| | Sbjct 11123 CACTGCCTATGAGTCGCCGGCTTATTCTTCAACAGGCACGCGGTCAGAGCGCAATGCTC- 11065 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTA 285 ||||||||||||| || |||||||||| | |||| Sbjct 11064 CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTA 11029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237777461248