Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq4906 197 3e-48 seq3447 176 9e-42 seq3132 161 2e-37 seq1 141 2e-31 seq12648 138 2e-30 seq3337 80.6 5e-13 seq4303 75.2 2e-11 seq86 73.4 8e-11 >seq4906 Length=31215 Score = 197 bits (218), Expect = 3e-48 Identities = 228/305 (75%), Gaps = 18/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 1886 GGCATTGCTCCGTCAGGCTTTCGCCCATTGAGGAAAATTCCCCACTGCTGCCTCCCGTAG 1945 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||| ||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 1946 GAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2005 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| | ||||||||| |||||| | ||||||||| || | Sbjct 2006 CATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 2065 Query 181 G-CGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 | ||| || || ||| ||||| | | || | ||||||||| Sbjct 2066 GTGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 2109 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 | |||||| ||| |||| ||| || |||||||| || ||| ||||||||||| |||| Sbjct 2110 CATTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCATCCG 2168 Query 300 CCACT 304 ||||| Sbjct 2169 CCACT 2173 >seq3447 Length=41424 Score = 176 bits (194), Expect = 9e-42 Identities = 216/292 (74%), Gaps = 16/292 (5%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| | ||||||| || | ||||||||||||||||| ||||||||||||||| Sbjct 11048 TCAGGCTTTCGCACATTGTGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCG 11107 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| ||| ||| |||||| | ||| ||| || | | ||||| |||| ||| |||||| Sbjct 11108 TGTCTTAGTTCCAGTGTGGCTGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGT 11167 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 |||||| |||||||||| |||||| | ||||||||| || | | || | || | Sbjct 11168 AAGCTATTGCTTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT--CGGGAGGATTCCT 11225 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | ||| ||||| | || | | ||||||||| |||||||| || Sbjct 11226 ---------CCTTTTGC--TCCTCAGCCA--ACGGGGTATTAGCAACCGTTTCCAGCTGT 11272 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | |||| ||| || |||||||| || ||| | ||||||||||||||||||| Sbjct 11273 TGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGCTACTCACCCGTCCGCCACT 11323 Score = 156 bits (172), Expect = 8e-36 Identities = 196/267 (73%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 39 CCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 |||||| ||||| |||| ||||||||||||||||||| ||| ||||| ||||| | ||| Sbjct 7789 CCCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCA 7848 Query 99 ACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAA 158 |||||| | || ||||| |||| | | |||||| |||||| |||||||||||| ||| Sbjct 7849 TCCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAA 7908 Query 159 TCGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCT 217 || | | | ||||| || | ||| ||| || || ||| ||||| Sbjct 7909 TCAGACTCAAGCCCCTCCTCGAGCGGATTCCTCCTT------------TTGC--TCCTCA 7954 Query 218 GACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGC 277 | | || | ||||||||| |||||||| ||| ||| ||| ||||||||||| | Sbjct 7955 GCC--TACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTT-C 8011 Query 278 TCACGTGTTACTCACCCGTCCGCCACT 304 | ||| |||||| |||||||||||||| Sbjct 8012 TTACGCGTTACTTACCCGTCCGCCACT 8038 >seq3132 Length=44694 Score = 161 bits (178), Expect = 2e-37 Identities = 142/176 (81%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCA-TTGTGCAATATCCCCCACTGCTGCCTCCCGTA 59 ||| | ||| | ||||| |||| |||| ||| || || ||||||| |||||||| ||| Sbjct 3251 GGCATTGCTCCGTCAGGCTTTCGCCCAATTGCAGAAAATTCCCCACTACTGCCTCCAGTA 3310 Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119 |||||||||||| ||||||||||||| |||||| | ||| |||||| | || ||||| || Sbjct 3311 GGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 3370 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || ||| ||||| |||||| ||||||||||| |||||| | ||||||||| || Sbjct 3371 TCATCGCCTTGGAAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTC 3426 >seq1 Length=548636 Score = 141 bits (156), Expect = 2e-31 Identities = 195/269 (72%), Gaps = 19/269 (7%) Strand=Plus/Plus Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96 || |||||||||| ||||| |||||||||||||| |||||||||||||| |||||| | | Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057 Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||||| | || | | |||| || ||||| |||||| ||||||||||| || Sbjct 27058 CATCCTCTCGGACCAAC-ATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116 Query 157 AATCGGCCGCGAGCCCATCTTTCAG-CGATAAATCTTTGGTCAAAGAATGATGCCATCCT 215 |||| || |||||| |||| || ||| || || ||| |||| Sbjct 27117 AATCAAACGTGAGCCCCTCTTCGAGTGGATTCCTCCTT------------TTGC--TCCT 27162 Query 216 CTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTT 275 | | | || | ||||||||| |||||||| ||| |||| ||| || |||||||| Sbjct 27163 CAGCC--TACGGGGTATTAGCAGCTGTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTT 27220 Query 276 GCTCACGTGTTACTCACCCGTCCGCCACT 304 || | |||||||||||| |||| ||||| Sbjct 27221 -CTTATGTGTTACTCACCTGTCCACCACT 27248 >seq12648 Length=11425 Score = 138 bits (152), Expect = 2e-30 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 85 ||||||| || || |||||||||| ||||||||||||||||||| |||||||||| |||| Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920 Query 86 ATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTC 145 ||| || | ||| |||| | || ||||| |||| | | |||||| |||||| ||| Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860 Query 146 ACCAACTACCTAATCGGCCGCGAGCC 171 |||||||| |||||| | ||||| || Sbjct 859 ACCAACTAGCTAATCAGACGCGAACC 834 >seq3337 Length=42490 Score = 80.6 bits (88), Expect = 5e-13 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 89 TGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACC 148 |||| | ||| |||||| | || ||||| |||| ||| |||||| |||||| |||||| Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973 Query 149 AACTACCTAATCGGCCGCGAGCCCATC 175 ||||| |||||| | ||||||||| || Sbjct 6972 AACTAGCTAATCAGACGCGAGCCCCTC 6946 >seq4303 Length=34690 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101 ||||||||||||| |||||||| |||||||||||||| ||||| |||||| | ||| || Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033 >seq86 Length=211116 Score = 73.4 bits (80), Expect = 8e-11 Identities = 62/75 (83%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 230 TATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACT 289 ||||||| ||||||||| ||| |||| ||| || |||||||| || ||| |||||| Sbjct 144638 TATTAGCAATCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACT 144580 Query 290 CACCCGTCCGCCACT 304 ||||||||||||||| Sbjct 144579 CACCCGTCCGCCACT 144565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995326205952