Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 197 3e-48
seq3447 176 9e-42
seq3132 161 2e-37
seq1 141 2e-31
seq12648 138 2e-30
seq3337 80.6 5e-13
seq4303 75.2 2e-11
seq86 73.4 8e-11
>seq4906
Length=31215
Score = 197 bits (218), Expect = 3e-48
Identities = 228/305 (75%), Gaps = 18/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 1886 GGCATTGCTCCGTCAGGCTTTCGCCCATTGAGGAAAATTCCCCACTGCTGCCTCCCGTAG 1945
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||| ||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 1946 GAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2005
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| | ||||||||| |||||| | ||||||||| || |
Sbjct 2006 CATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 2065
Query 181 G-CGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
| ||| || || ||| ||||| | | || | |||||||||
Sbjct 2066 GTGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 2109
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
| |||||| ||| |||| ||| || |||||||| || ||| ||||||||||| ||||
Sbjct 2110 CATTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCATCCG 2168
Query 300 CCACT 304
|||||
Sbjct 2169 CCACT 2173
>seq3447
Length=41424
Score = 176 bits (194), Expect = 9e-42
Identities = 216/292 (74%), Gaps = 16/292 (5%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| | ||||||| || | ||||||||||||||||| |||||||||||||||
Sbjct 11048 TCAGGCTTTCGCACATTGTGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCG 11107
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||| ||| ||| |||||| | ||| ||| || | | ||||| |||| ||| ||||||
Sbjct 11108 TGTCTTAGTTCCAGTGTGGCTGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGT 11167
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192
|||||| |||||||||| |||||| | ||||||||| || | | || | || |
Sbjct 11168 AAGCTATTGCTTCACCAACTAGCTAATCAGACGCGAGCCCCTCCT--CGGGAGGATTCCT 11225
Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252
| ||| ||||| | || | | ||||||||| |||||||| ||
Sbjct 11226 ---------CCTTTTGC--TCCTCAGCCA--ACGGGGTATTAGCAACCGTTTCCAGCTGT 11272
Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
| |||| ||| || |||||||| || ||| | |||||||||||||||||||
Sbjct 11273 TGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGCTACTCACCCGTCCGCCACT 11323
Score = 156 bits (172), Expect = 8e-36
Identities = 196/267 (73%), Gaps = 18/267 (7%)
Strand=Plus/Plus
Query 39 CCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98
|||||| ||||| |||| ||||||||||||||||||| ||| ||||| ||||| | |||
Sbjct 7789 CCCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCA 7848
Query 99 ACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAA 158
|||||| | || ||||| |||| | | |||||| |||||| |||||||||||| |||
Sbjct 7849 TCCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAA 7908
Query 159 TCGGCCGCGAGCCCATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCT 217
|| | | | ||||| || | ||| ||| || || ||| |||||
Sbjct 7909 TCAGACTCAAGCCCCTCCTCGAGCGGATTCCTCCTT------------TTGC--TCCTCA 7954
Query 218 GACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGC 277
| | || | ||||||||| |||||||| ||| ||| ||| ||||||||||| |
Sbjct 7955 GCC--TACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTT-C 8011
Query 278 TCACGTGTTACTCACCCGTCCGCCACT 304
| ||| |||||| ||||||||||||||
Sbjct 8012 TTACGCGTTACTTACCCGTCCGCCACT 8038
>seq3132
Length=44694
Score = 161 bits (178), Expect = 2e-37
Identities = 142/176 (81%), Gaps = 1/176 (1%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCA-TTGTGCAATATCCCCCACTGCTGCCTCCCGTA 59
||| | ||| | ||||| |||| |||| ||| || || ||||||| |||||||| |||
Sbjct 3251 GGCATTGCTCCGTCAGGCTTTCGCCCAATTGCAGAAAATTCCCCACTACTGCCTCCAGTA 3310
Query 60 GGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGA 119
|||||||||||| ||||||||||||| |||||| | ||| |||||| | || ||||| ||
Sbjct 3311 GGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGA 3370
Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
|| ||| ||||| |||||| ||||||||||| |||||| | ||||||||| ||
Sbjct 3371 TCATCGCCTTGGAAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTC 3426
>seq1
Length=548636
Score = 141 bits (156), Expect = 2e-31
Identities = 195/269 (72%), Gaps = 19/269 (7%)
Strand=Plus/Plus
Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96
|| |||||||||| ||||| |||||||||||||| |||||||||||||| |||||| | |
Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057
Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156
|| |||||| | || | | |||| || ||||| |||||| ||||||||||| ||
Sbjct 27058 CATCCTCTCGGACCAAC-ATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116
Query 157 AATCGGCCGCGAGCCCATCTTTCAG-CGATAAATCTTTGGTCAAAGAATGATGCCATCCT 215
|||| || |||||| |||| || ||| || || ||| ||||
Sbjct 27117 AATCAAACGTGAGCCCCTCTTCGAGTGGATTCCTCCTT------------TTGC--TCCT 27162
Query 216 CTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTT 275
| | | || | ||||||||| |||||||| ||| |||| ||| || ||||||||
Sbjct 27163 CAGCC--TACGGGGTATTAGCAGCTGTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTT 27220
Query 276 GCTCACGTGTTACTCACCCGTCCGCCACT 304
|| | |||||||||||| |||| |||||
Sbjct 27221 -CTTATGTGTTACTCACCTGTCCACCACT 27248
>seq12648
Length=11425
Score = 138 bits (152), Expect = 2e-30
Identities = 118/146 (81%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 26 CATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 85
||||||| || || |||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920
Query 86 ATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTC 145
||| || | ||| |||| | || ||||| |||| | | |||||| |||||| |||
Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860
Query 146 ACCAACTACCTAATCGGCCGCGAGCC 171
|||||||| |||||| | ||||| ||
Sbjct 859 ACCAACTAGCTAATCAGACGCGAACC 834
>seq3337
Length=42490
Score = 80.6 bits (88), Expect = 5e-13
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 89 TGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACC 148
|||| | ||| |||||| | || ||||| |||| ||| |||||| |||||| ||||||
Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973
Query 149 AACTACCTAATCGGCCGCGAGCCCATC 175
||||| |||||| | ||||||||| ||
Sbjct 6972 AACTAGCTAATCAGACGCGAGCCCCTC 6946
>seq4303
Length=34690
Score = 75.2 bits (82), Expect = 2e-11
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACC 101
||||||||||||| |||||||| |||||||||||||| ||||| |||||| | ||| ||
Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033
>seq86
Length=211116
Score = 73.4 bits (80), Expect = 8e-11
Identities = 62/75 (83%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 230 TATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACT 289
||||||| ||||||||| ||| |||| ||| || |||||||| || ||| ||||||
Sbjct 144638 TATTAGCAATCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACT 144580
Query 290 CACCCGTCCGCCACT 304
|||||||||||||||
Sbjct 144579 CACCCGTCCGCCACT 144565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 995326205952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |