Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2006 185 2e-44 seq1861 174 4e-41 seq272 154 3e-35 seq750 152 1e-34 seq4906 143 6e-32 seq29124 96.9 8e-18 seq68515 77.0 8e-12 >seq2006 Length=59971 Score = 185 bits (204), Expect = 2e-44 Identities = 290/407 (71%), Gaps = 15/407 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||| | |||||| || ||||||||| | ||| ||| | | Sbjct 44914 CGACTACGCCTTTCGGCTTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 44855 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | | |||| |||| | || |||||| || Sbjct 44854 GAGGAACCCTTAGGTTTTCGGGGCATTGAATTCTCACCAATGTTTGCGTTACTCAAGCTG 44795 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||| || ||| || |||||| | | |||| ||| ||||| | || | Sbjct 44794 ACATTCTAGCTTCCGCTTCT--TCCACCCC-CGCTCACGCGGTTGCTTCCCTCTTGGCGG 44738 Query 178 GACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||| ||||||||| | || ||| | ||||||||| ||| ||| |||| ||| Sbjct 44737 AACGTTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTTGGCAGATCGCTTA-GCC 44682 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||| ||||||||||||||||||||| Sbjct 44681 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAACTATTACGCACTCTTTCAAGGG 44623 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | | |||||||||| ||||| ||| | | || |||||| ||||||| Sbjct 44622 TGGCTGCTTCTAGGAAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAG 44563 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || | ||||||||||||| ||||| ||||||||| ||||||| Sbjct 44562 CGATCATTGAGGGGCCTTAGCTAGTGATCCGGGCTGTTTTCCTCTCG 44516 >seq1861 Length=62895 Score = 174 bits (192), Expect = 4e-41 Identities = 292/409 (71%), Gaps = 24/409 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCC---AGGGCAGACAAACTTG 57 ||||||||||| | ||||| |||||| || ||||||||| | || || | |||| Sbjct 27849 CGACTACGCCTTTTGGCCTGATCTTAGGCCCTGACTCACCCTCCATGGATGA--ACCTTG 27906 Query 58 ACCCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATG 116 | ||||||||| | | | || | | |||||| | || | || |||||| | Sbjct 27907 -CGGAGGAACCCTTAGGTTTTTGGGGCATTGGATTCTCCCCAATGTTTGCGTTACTCAAG 27965 Query 117 CCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACT-G 173 || ||||||| || ||| || |||| | | | || | ||| |||| || || | Sbjct 27966 CCAACATTCTCGCTTCCGCTTCG--TCCATCCC-CGCTCGCGCGGTTACTTC-CCTCTAG 28021 Query 174 ACACGACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 || ||||||||||||| | || ||| | ||||||||||||| ||| |||| Sbjct 28022 GCAGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA 28078 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 |||| | ||| ||||||| | | || || |||||||||||||| |||||||||| Sbjct 28079 -GCCCA--TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACACACTCTTTCA 28135 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 ||| ||||| |||| | || |||||||||| ||||| ||| | | || |||||| || Sbjct 28136 AGGGTGGCTACTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCAT 28195 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||| | || |||||||||||||||| ||||| |||||||||| |||| Sbjct 28196 TGAGAGATCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCTCTCT 28244 >seq272 Length=148728 Score = 154 bits (170), Expect = 3e-35 Identities = 152/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| | |||| || ||| |||| |||||| | | | || |||| | | || || || Sbjct 11704 CCATAACTTCTGCAGATTGCTTA-GCCCCGTT-CGTCTTCAGCGCAAGAGCTCTCGATCA 11647 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||| |||||| | || | |||||||||||||| Sbjct 11646 GTGAGCTATTACGCACTCTTTCAAGGGTGGTTGCTTCTAGGCAAGCCTCCTGGTTGTCTC 11587 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || |||||| ||||||| | || |||||||||||||||| ||||| ||| Sbjct 11586 TGCACCCTTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGG 11527 Query 387 CTGTTTCCCTCTCG 400 ||||||||||||| Sbjct 11526 TTGTTTCCCTCTCG 11513 >seq750 Length=101112 Score = 152 bits (168), Expect = 1e-34 Identities = 154/197 (78%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA---CTTGA 263 ||||| ||||||| ||| |||| |||| | | ||| || |||| | | || || Sbjct 67739 CCACAACTTCGGCAGATCGCTTA-GCCCAGTT-CATCTTCTGCGCAACAAGAGCGCTCGA 67682 Query 264 CCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 |||||||||||||||||||||||||||| |||||||||| | | ||| |||| | ||| Sbjct 67681 TCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGAAAACTTCCTCGCTGT 67622 Query 324 CTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCT 383 || ||| | | || |||||| ||||||| | || |||||||||||||||| ||||| Sbjct 67621 CTCTGCACCCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCC 67562 Query 384 GGGCTGTTTCCCTCTCG 400 ||||||||||||||||| Sbjct 67561 GGGCTGTTTCCCTCTCG 67545 >seq4906 Length=31215 Score = 143 bits (158), Expect = 6e-32 Identities = 237/333 (71%), Gaps = 17/333 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 278 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 337 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | || | | | |||||| |||| | || |||||| ||| Sbjct 338 GAGGAACCCTTAGGTTTTCAGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 397 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACT-GACA 176 ||||||| || ||| || |||||| | | |||| ||| ||||| || || | | Sbjct 398 ACATTCTCGCTTCCGCTTCG--TCCACCCC-CGCTCACGCGGTTGCTTC-CCTCTAGGCG 453 Query 177 CGACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGC 232 ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 454 GAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTATCC 510 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 || | ||| ||||||| | | || || ||||||||||||||||||| |||||||| Sbjct 511 CCA--TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTATTTCAAGG 568 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||| | || |||||||||| ||||| Sbjct 569 GTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 601 >seq29124 Length=2696 Score = 96.9 bits (106), Expect = 8e-18 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 |||| || |||||||||||||||||||||||||||| |||||||||| | || ||||||| Sbjct 415 CACTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCC 474 Query 317 TGGTTGTCTACGCAACTC 334 ||| ||||| ||| ||| Sbjct 475 TGGCTGTCTCTGCACCTC 492 >seq68515 Length=878 Score = 77.0 bits (84), Expect = 8e-12 Identities = 53/60 (88%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 265 CAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||| ||||||||||| |||||||| |||||||||| | || |||||||||| |||| Sbjct 303 CAGTGAGGTATTACGCACTGTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTC 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173974499328