Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 118 9e-25
seq2355 111 1e-22
seq3447 84.2 2e-14
seq12648 73.4 3e-11
>seq4906
Length=31215
Score = 118 bits (130), Expect = 9e-25
Identities = 122/160 (76%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| |||||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 987 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1046
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || |||| ||| | |||||||| ||||||| ||| ||| |||| |||
Sbjct 1047 GATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGCCTAGGGCATTAGGGGCAT 1106
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 1107 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1146
>seq2355
Length=54213
Score = 111 bits (122), Expect = 1e-22
Identities = 100/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| ||| ||||||| |||||||||| | ||| |||| ||| |||||||| |||
Sbjct 38455 TTTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACG 38396
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| |
Sbjct 38395 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCT 38336
Query 156 TGTCAC 161
| ||||
Sbjct 38335 TATCAC 38330
>seq3447
Length=41424
Score = 84.2 bits (92), Expect = 2e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||| ||
Sbjct 10279 CCATTGTAGCACGTGTGTTGCCCTGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 10338
Query 143 CCTTCCTCCGGTTTGTCAC 161
| ||||||||| || ||||
Sbjct 10339 CTTTCCTCCGGCTTATCAC 10357
>seq12648
Length=11425
Score = 73.4 bits (80), Expect = 3e-11
Identities = 63/78 (81%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| |||||| ||| | |||||||| ||||| |||||||| |||||| ||
Sbjct 2853 CCATTGTAGCACGTGTCTCGCCTAAAGCATAAGGGGCATGATGACTTGACATCATCCTCA 2794
Query 143 CCTTCCTCCGGTTTGTCA 160
||||||||||| || |||
Sbjct 2793 CCTTCCTCCGGCTTATCA 2776
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414759275840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |