Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq4906 118 9e-25 seq2355 111 1e-22 seq3447 84.2 2e-14 seq12648 73.4 3e-11 >seq4906 Length=31215 Score = 118 bits (130), Expect = 9e-25 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 987 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 1046 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| | |||||||| ||||||| ||| ||| |||| ||| Sbjct 1047 GATCACGACCCTTTGTCTCGGCCATTGTAGCACGTGTGTCGCCTAGGGCATTAGGGGCAT 1106 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 1107 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 1146 >seq2355 Length=54213 Score = 111 bits (122), Expect = 1e-22 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| |||||||||| | ||| |||| ||| |||||||| ||| Sbjct 38455 TTTTTGGAGTTAGCTCACCCTCGCGGGATCGCGACCCTTTGTCCCGGCCATTGTAGCACG 38396 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||| | Sbjct 38395 TGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCGGCT 38336 Query 156 TGTCAC 161 | |||| Sbjct 38335 TATCAC 38330 >seq3447 Length=41424 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||| || Sbjct 10279 CCATTGTAGCACGTGTGTTGCCCTGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 10338 Query 143 CCTTCCTCCGGTTTGTCAC 161 | ||||||||| || |||| Sbjct 10339 CTTTCCTCCGGCTTATCAC 10357 >seq12648 Length=11425 Score = 73.4 bits (80), Expect = 3e-11 Identities = 63/78 (81%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| |||||| ||| | |||||||| ||||| |||||||| |||||| || Sbjct 2853 CCATTGTAGCACGTGTCTCGCCTAAAGCATAAGGGGCATGATGACTTGACATCATCCTCA 2794 Query 143 CCTTCCTCCGGTTTGTCA 160 ||||||||||| || ||| Sbjct 2793 CCTTCCTCCGGCTTATCA 2776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414759275840