Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq4906 140 5e-31 seq3447 120 5e-25 seq6320 100 5e-19 seq73673 96.9 6e-18 seq3337 82.4 1e-13 seq3132 82.4 1e-13 >seq4906 Length=31215 Score = 140 bits (154), Expect = 5e-31 Identities = 202/285 (71%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 1540 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1599 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| |||||| |||| || | | |||| || Sbjct 1600 CCGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCTCTGCCCCTACCGTACTCCAG 1659 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | | | ||||| ||||| | ||| || | ||||| Sbjct 1660 CTTGGTAGTTTCCACCACCTGTCCAGGGTTAAGCCCTGGGATTTGACGGCGGACTTAAAA 1719 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | || |||||||||||| ||| |||||| Sbjct 1720 AGCCACCTACAGACTCTTTACGCCCAATCATTCATGATAACGCTTGCATCCTCTGTATTA 1779 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 1780 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1824 >seq3447 Length=41424 Score = 120 bits (132), Expect = 5e-25 Identities = 197/286 (69%), Gaps = 11/286 (4%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| |||||| | | |||| | || |||||| ||| |||| | | || |||| Sbjct 10689 CTCAGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCGTTGGAGTTCTTTCCGATCTCTA 10748 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| | |||||| |||| || | | |||| || |||| Sbjct 10749 CGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTT 10808 Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195 || | || | ||||||||||| | ||| ||| | ||||| || ||||| Sbjct 10809 TCCACCGCCTGTCCAGGGTTGAGCCCTAGGATTTGACAGCGGACTTAAAAAGCCACCTAC 10868 Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255 | | ||||||||| ||| | ||| |||||||||||| ||| ||||||| | |||||| Sbjct 10869 AGACGCTTTACACCTAATCATTCCAGATAACGCTTGCATCCTCTGTATTACTGTGGCTGC 10928 Query 256 -----------TGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||||||||| ||||||||| ||| || Sbjct 10929 TGGCATGGAGTTGGCACGGAGTTAGCCGATGCTTATTCCCCAGATA 10974 >seq6320 Length=24830 Score = 100 bits (110), Expect = 5e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252 |||| | |||||| |||||| | |||||||||||||||| ||| ||||||||||||| Sbjct 4443 TACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGC 4502 Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||| ||||||| | ||||||||| ||| || Sbjct 4503 TGCTGGCACAGAGTTAGCAGATGCTTATTCCCCAGATA 4540 >seq73673 Length=787 Score = 96.9 bits (106), Expect = 6e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | || | | ||| |||||| || ||| ||||| Sbjct 570 CCGCCTACGTGCCCTTTACGCCCAGTCATTCTGAAGAACACTTGCCCCCCCCGTCTTACC 629 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||||||||||||| ||||||||| ||||| |||||| Sbjct 630 GAGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 667 >seq3337 Length=42490 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 218 CCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277 ||||||||||||||| ||| ||||||||||||||||||| || ||||||||| ||| Sbjct 7568 CCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGTACAGAGTTAGCCGATGCT 7509 Query 278 TATTCCTCAGGTA 290 |||||| ||| || Sbjct 7508 TATTCCCCAGATA 7496 >seq3132 Length=44694 Score = 82.4 bits (90), Expect = 1e-13 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 || |||||| | |||||| |||||| | ||| ||||||| |||| ||| ||||||| Sbjct 3087 CCACCTACAGACACTTTACGCCCAATCATTCCAGATAACGTTTGCATCCTCTATATTACC 3146 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||||| |||||||| ||||||||| ||| || Sbjct 3147 GCGGCTGTTGGCATAGAGTTAGCCAATGCTTATTCCCCAGATA 3189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826328095712