Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 140 5e-31
seq3447 120 5e-25
seq6320 100 5e-19
seq73673 96.9 6e-18
seq3337 82.4 1e-13
seq3132 82.4 1e-13
>seq4906
Length=31215
Score = 140 bits (154), Expect = 5e-31
Identities = 202/285 (71%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | |||||| || |||||| |||||||| |
Sbjct 1540 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 1599
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || |||||||||||||||||| ||| |||||| |||| || | | |||| ||
Sbjct 1600 CCGATCTCTACGCATTTCACCGCTCCACCGAAAATTCCCTCTGCCCCTACCGTACTCCAG 1659
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | | | ||||| ||||| | ||| || | |||||
Sbjct 1660 CTTGGTAGTTTCCACCACCTGTCCAGGGTTAAGCCCTGGGATTTGACGGCGGACTTAAAA 1719
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | |||||| |||||| | || |||||||||||| ||| ||||||
Sbjct 1720 AGCCACCTACAGACTCTTTACGCCCAATCATTCATGATAACGCTTGCATCCTCTGTATTA 1779
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 1780 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1824
>seq3447
Length=41424
Score = 120 bits (132), Expect = 5e-25
Identities = 197/286 (69%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75
||||| |||||| | | |||| | || |||||| ||| |||| | | || ||||
Sbjct 10689 CTCAGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCGTTGGAGTTCTTTCCGATCTCTA 10748
Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135
|||||||||||||| ||| | |||||| |||| || | | |||| || ||||
Sbjct 10749 CGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAGCTTGGTAGTT 10808
Query 136 TCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTAC 195
|| | || | ||||||||||| | ||| ||| | ||||| || |||||
Sbjct 10809 TCCACCGCCTGTCCAGGGTTGAGCCCTAGGATTTGACAGCGGACTTAAAAAGCCACCTAC 10868
Query 196 ACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGC 255
| | ||||||||| ||| | ||| |||||||||||| ||| ||||||| | ||||||
Sbjct 10869 AGACGCTTTACACCTAATCATTCCAGATAACGCTTGCATCCTCTGTATTACTGTGGCTGC 10928
Query 256 -----------TGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||| ||||||||| ||||||||| ||| ||
Sbjct 10929 TGGCATGGAGTTGGCACGGAGTTAGCCGATGCTTATTCCCCAGATA 10974
>seq6320
Length=24830
Score = 100 bits (110), Expect = 5e-19
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 193 TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGC 252
|||| | |||||| |||||| | |||||||||||||||| ||| |||||||||||||
Sbjct 4443 TACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCGCGGC 4502
Query 253 TGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||| ||||||| | ||||||||| ||| ||
Sbjct 4503 TGCTGGCACAGAGTTAGCAGATGCTTATTCCCCAGATA 4540
>seq73673
Length=787
Score = 96.9 bits (106), Expect = 6e-18
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|||||||| ||||||||| |||| | | || | | ||| |||||| || ||| |||||
Sbjct 570 CCGCCTACGTGCCCTTTACGCCCAGTCATTCTGAAGAACACTTGCCCCCCCCGTCTTACC 629
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| ||||||||||||| ||||||||| ||||| ||||||
Sbjct 630 GAGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 667
>seq3337
Length=42490
Score = 82.4 bits (90), Expect = 1e-13
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 218 CCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277
||||||||||||||| ||| ||||||||||||||||||| || ||||||||| |||
Sbjct 7568 CCGGATAACGCTTGCATCCTCTGTATTACCGCGGCTGCTGGTACAGAGTTAGCCGATGCT 7509
Query 278 TATTCCTCAGGTA 290
|||||| ||| ||
Sbjct 7508 TATTCCCCAGATA 7496
>seq3132
Length=44694
Score = 82.4 bits (90), Expect = 1e-13
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|| |||||| | |||||| |||||| | ||| ||||||| |||| ||| |||||||
Sbjct 3087 CCACCTACAGACACTTTACGCCCAATCATTCCAGATAACGTTTGCATCCTCTATATTACC 3146
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||| ||||| |||||||| ||||||||| ||| ||
Sbjct 3147 GCGGCTGTTGGCATAGAGTTAGCCAATGCTTATTCCCCAGATA 3189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 826328095712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |