Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq9685 87.8 1e-15
seq750 78.8 7e-13
seq1861 75.2 8e-12
>seq9685
Length=15958
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| ||||||||||||||||||||||||||||| || || |||||||||| | ||
Sbjct 3697 TAACTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 3756
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||| | | ||| |||| |||||||
Sbjct 3757 CTTTCGTCCCTGCTCGACAGGTGGGTCTTGCAGTCAACCTCCCTTCTGCCTTTGCACT 3814
>seq750
Length=101112
Score = 78.8 bits (86), Expect = 7e-13
Identities = 88/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| ||||||||||||||| || |||||||||| || || |||||||||| | ||
Sbjct 69005 TAACTTTTATCCGTTGAGTGACGGCCCTTCCACTCTGCACCGTCGGATCACTAAGGCCGA 68946
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| || ||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 68945 CTTTCGTCCCTACTCGATGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 68888
>seq1861
Length=62895
Score = 75.2 bits (82), Expect = 8e-12
Identities = 90/121 (74%), Gaps = 6/121 (5%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATT---CATAGCCACCGGATCACTATGAC 57
|| |||||||||||||||||| |||||||||| | ||| | || |||||||| | |
Sbjct 26793 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCATCGTCA---GATCACTAAGGC 26849
Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117
||||| |||||| | | || | ||| ||| |||||| | ||| |||| ||||||
Sbjct 26850 AGACTTTCCTCCCTGCTCGACTGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 26909
Query 118 T 118
|
Sbjct 26910 T 26910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 350984022400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |