Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq9685 87.8 1e-15 seq750 78.8 7e-13 seq1861 75.2 8e-12 >seq9685 Length=15958 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||||||||||||||||| || || |||||||||| | || Sbjct 3697 TAACTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGA 3756 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||| | | ||| |||| ||||||| Sbjct 3757 CTTTCGTCCCTGCTCGACAGGTGGGTCTTGCAGTCAACCTCCCTTCTGCCTTTGCACT 3814 >seq750 Length=101112 Score = 78.8 bits (86), Expect = 7e-13 Identities = 88/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||||||| || |||||||||| || || |||||||||| | || Sbjct 69005 TAACTTTTATCCGTTGAGTGACGGCCCTTCCACTCTGCACCGTCGGATCACTAAGGCCGA 68946 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| || ||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 68945 CTTTCGTCCCTACTCGATGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 68888 >seq1861 Length=62895 Score = 75.2 bits (82), Expect = 8e-12 Identities = 90/121 (74%), Gaps = 6/121 (5%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATT---CATAGCCACCGGATCACTATGAC 57 || |||||||||||||||||| |||||||||| | ||| | || |||||||| | | Sbjct 26793 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCATCGTCA---GATCACTAAGGC 26849 Query 58 CTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 ||||| |||||| | | || | ||| ||| |||||| | ||| |||| |||||| Sbjct 26850 AGACTTTCCTCCCTGCTCGACTGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCAC 26909 Query 118 T 118 | Sbjct 26910 T 26910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350984022400