Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq81025 118 1e-24 seq839 105 7e-21 >seq81025 Length=688 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 440 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 381 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| || || ||| || | ||| | ||||||| Sbjct 380 GGGATAACATCATAGGATTT-CGGTCCTGTTCTGTTGGCCTTCGGGATCAGA-GTAATGA 323 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||||||||||||| | |||| || |||| |||| ||||||||||||||| Sbjct 322 TTAACAGGGATAGTCGGGGGCATTCATATTTCATAGTCAGAGGTAAAATTCTTGGATTTA 263 Query 190 T 190 | Sbjct 262 T 262 >seq839 Length=95879 Score = 105 bits (116), Expect = 7e-21 Identities = 135/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 10239 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 10180 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||| ||| | | ||| || ||||||| Sbjct 10179 GGGATAACATCATAGGATTT-CGGTCTTATACTGTTGCCCTTCGGGATCGGA-GTAATGA 10122 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| | |||| || ||||||||||||||||| Sbjct 10121 TTAACAGGGACAGTCGGGGGCATTCGTATTTCACAGTCAGAG-TGAAATTCTTGGATTTA 10063 Query 190 T 190 | Sbjct 10062 T 10062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510472954880