Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2006 246 5e-63 seq750 228 1e-57 seq136668 217 2e-54 seq9685 208 1e-51 seq1861 196 7e-48 seq87 147 3e-33 >seq2006 Length=59971 Score = 246 bits (272), Expect = 5e-63 Identities = 219/273 (80%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| | || ||| |||||| Sbjct 46308 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCTCAGTTGGCTACCCAGCG 46249 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| ||||| |||| ||||| |||||||||||||||||| Sbjct 46248 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGTGTCCTTCCCGGTCCTCTCGTACT 46189 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || ||||||| |||||| ||||||||||||||| Sbjct 46188 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCATACCGGATATGGACCGAACTGTCTCATT 46129 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 46128 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 46069 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||||||| | || |||||||||||| Sbjct 46068 ACTACAACCCCAGGTGGCGAAGAGCCGACATCG 46036 >seq750 Length=101112 Score = 228 bits (252), Expect = 1e-57 Identities = 215/273 (79%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||| || Sbjct 69339 GGTGGGCTTACTACTTAGATGCTTTCAGCAATTATCCGGTCCTCACTTGGCTACCCAACT 69280 Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | ||| || | ||||||| ||||| |||| |||| ||| |||||||||||||| Sbjct 69279 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGCGTCCTTCCTGGTCCTCTCGTACT 69220 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| | ||||||||| || | |||||| ||||| ||||||||||||||| Sbjct 69219 AGGGAAATGTCCTCTCAATGCTCTAAAGCCCACACAGGATATGGACCGAACTGTCTCATT 69160 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| |||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 69159 ACGTTCTTAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 69100 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 69099 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 69067 >seq136668 Length=350 Score = 217 bits (240), Expect = 2e-54 Identities = 190/235 (81%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| ||||| |||| |||| ||| |||||| Sbjct 115 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCTGCTCCACACTTGGCTACCCAGCG 174 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 175 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 234 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || | |||||| |||||| ||||| ||||||||| || Sbjct 235 AGGGAAAGGTCCTCTCAATGCTCTAATGCCCACACCGGATATGGACCAAACTGTCTCACG 294 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237 || ||||||||||||||| ||| || ||||||||||||||||||||||||||||| Sbjct 295 ACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGG 349 >seq9685 Length=15958 Score = 208 bits (230), Expect = 1e-51 Identities = 203/260 (78%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||| | |||||| |||| |||| || |||||| | | | | |||| Sbjct 3376 CTTAGATGCTTTCAACAGTTATCCGCTCCACACTTGGCGACCCAGCATTTACTGTGGGCA 3435 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | |||| || | |||||||| ||| || ||||||||| |||||| ||| || |||| Sbjct 3436 CGATAACTAGTACCCCAGAGGTGCATCCTTCTCGGTCCTCTAGTACTAGGGAAAGGTCCT 3495 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || ||||||| | |||||| ||||||||||||||| ||||||||||||||| Sbjct 3496 CTCAATGCTCTAACGCCCATGTCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 3555 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | || | | || |||||||||||||||| |||||||||||| || |||| || ||||| Sbjct 3556 AATTCACATACCGCTTTAATGGGCGAACATCCCAACCCTTGGAACATACTACAACCCCAA 3615 Query 256 GATGAGACGAGCCGACATCG 275 | | || ||||| |||||| Sbjct 3616 GTGGTGAAGAGCCAACATCG 3635 >seq1861 Length=62895 Score = 196 bits (216), Expect = 7e-48 Identities = 158/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 85 GTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTT 144 || ||||| |||| |||| |||| |||||||||||||| ||| || ||||||||| | Sbjct 26541 GTACACCAAAGGTGCGTCCTTCCCAGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCT 26600 Query 145 CCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 | |||||||| | ||| |||||||||||| || |||| ||||||||||||||| ||| Sbjct 26601 CTAACGCCCACACTGAATATGGACCGAACTGTTTCACGACATTCTGAACCCAGCTCACGT 26660 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||||||||||||||| |||||||||||| || |||| |||||||||| | || | Sbjct 26661 ACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAG 26720 Query 265 AGCCGACATCG 275 ||||||||||| Sbjct 26721 AGCCGACATCG 26731 >seq87 Length=208552 Score = 147 bits (162), Expect = 3e-33 Identities = 115/136 (85%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 82 CTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAA 141 ||||| |||||||||| |||| ||||||||||||||||||| ||| || ||||||||| Sbjct 69461 CTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAAT 69520 Query 142 TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG 201 || |||||||| |||||| ||||||||||||||| |||||||||||||||||||| Sbjct 69521 GCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCA 69580 Query 202 CGTGCCTCTT-TAATG 216 | | || ||| ||||| Sbjct 69581 CATACCGCTTGTAATG 69596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778471256192