Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq2006 246 5e-63
seq750 228 1e-57
seq136668 217 2e-54
seq9685 208 1e-51
seq1861 196 7e-48
seq87 147 3e-33
>seq2006
Length=59971
Score = 246 bits (272), Expect = 5e-63
Identities = 219/273 (80%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| | || ||| ||||||
Sbjct 46308 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCTCAGTTGGCTACCCAGCG 46249
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| ||||| |||| ||||| ||||||||||||||||||
Sbjct 46248 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGTGTCCTTCCCGGTCCTCTCGTACT 46189
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || ||||||| |||||| |||||||||||||||
Sbjct 46188 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCATACCGGATATGGACCGAACTGTCTCATT 46129
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 46128 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 46069
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| || ||||||| | || ||||||||||||
Sbjct 46068 ACTACAACCCCAGGTGGCGAAGAGCCGACATCG 46036
>seq750
Length=101112
Score = 228 bits (252), Expect = 1e-57
Identities = 215/273 (79%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| |||| ||
Sbjct 69339 GGTGGGCTTACTACTTAGATGCTTTCAGCAATTATCCGGTCCTCACTTGGCTACCCAACT 69280
Query 64 ATGCACTTGG-CAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | ||| || | ||||||| ||||| |||| |||| ||| ||||||||||||||
Sbjct 69279 TTTACCGTGGGCACGATAACTGGTACACCAAAGGTGCGTCCTTCCTGGTCCTCTCGTACT 69220
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| | ||||||||| || | |||||| ||||| |||||||||||||||
Sbjct 69219 AGGGAAATGTCCTCTCAATGCTCTAAAGCCCACACAGGATATGGACCGAACTGTCTCATT 69160
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
||||||| |||||||||| ||| || ||||||||||||||||||||||||||||| || |
Sbjct 69159 ACGTTCTTAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 69100
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||||||| | || ||||||||||||
Sbjct 69099 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 69067
>seq136668
Length=350
Score = 217 bits (240), Expect = 2e-54
Identities = 190/235 (81%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| ||||| |||| |||| ||| ||||||
Sbjct 115 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCTGCTCCACACTTGGCTACCCAGCG 174
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 175 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 234
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| ||| || ||||||||| || | |||||| |||||| ||||| ||||||||| ||
Sbjct 235 AGGGAAAGGTCCTCTCAATGCTCTAATGCCCACACCGGATATGGACCAAACTGTCTCACG 294
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGG 237
|| ||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct 295 ACATTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGG 349
>seq9685
Length=15958
Score = 208 bits (230), Expect = 1e-51
Identities = 203/260 (78%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
||||||||| |||| | |||||| |||| |||| || |||||| | | | | ||||
Sbjct 3376 CTTAGATGCTTTCAACAGTTATCCGCTCCACACTTGGCGACCCAGCATTTACTGTGGGCA 3435
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| |||| || | |||||||| ||| || ||||||||| |||||| ||| || ||||
Sbjct 3436 CGATAACTAGTACCCCAGAGGTGCATCCTTCTCGGTCCTCTAGTACTAGGGAAAGGTCCT 3495
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||| || ||||||| | |||||| ||||||||||||||| |||||||||||||||
Sbjct 3496 CTCAATGCTCTAACGCCCATGTCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 3555
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
| || | | || |||||||||||||||| |||||||||||| || |||| || |||||
Sbjct 3556 AATTCACATACCGCTTTAATGGGCGAACATCCCAACCCTTGGAACATACTACAACCCCAA 3615
Query 256 GATGAGACGAGCCGACATCG 275
| | || ||||| ||||||
Sbjct 3616 GTGGTGAAGAGCCAACATCG 3635
>seq1861
Length=62895
Score = 196 bits (216), Expect = 7e-48
Identities = 158/191 (83%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 85 GTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTT 144
|| ||||| |||| |||| |||| |||||||||||||| ||| || ||||||||| |
Sbjct 26541 GTACACCAAAGGTGCGTCCTTCCCAGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCT 26600
Query 145 CCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
| |||||||| | ||| |||||||||||| || |||| ||||||||||||||| |||
Sbjct 26601 CTAACGCCCACACTGAATATGGACCGAACTGTTTCACGACATTCTGAACCCAGCTCACGT 26660
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| |||||||||||||||| |||||||||||| || |||| |||||||||| | || |
Sbjct 26661 ACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAG 26720
Query 265 AGCCGACATCG 275
|||||||||||
Sbjct 26721 AGCCGACATCG 26731
>seq87
Length=208552
Score = 147 bits (162), Expect = 3e-33
Identities = 115/136 (85%), Gaps = 1/136 (1%)
Strand=Plus/Plus
Query 82 CTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAA 141
||||| |||||||||| |||| ||||||||||||||||||| ||| || |||||||||
Sbjct 69461 CTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAAT 69520
Query 142 TTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCG 201
|| |||||||| |||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 69521 GCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCA 69580
Query 202 CGTGCCTCTT-TAATG 216
| | || ||| |||||
Sbjct 69581 CATACCGCTTGTAATG 69596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 778471256192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |