Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4906 262 1e-67 seq3447 239 1e-60 seq3132 185 2e-44 seq12648 140 8e-31 seq1 134 3e-29 seq4303 80.6 6e-13 seq73673 77.0 8e-12 seq3337 77.0 8e-12 >seq4906 Length=31215 Score = 262 bits (290), Expect = 1e-67 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 1855 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1914 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||| ||||| ||||||| Sbjct 1915 GAGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGTGT 1974 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| |||| ||| Sbjct 1975 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCACCA 2034 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| ||| || ||| ||| |||| Sbjct 2035 ACTAGCTAATCAGACGCGAGCCCCTCCTCGGGTG-GA---------TTCCTCCT-TTTGC 2083 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| || ||||||| ||| | ||||||| |||| Sbjct 2084 TCCTCAGCC--TACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 2141 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||| ||||||||| ||| || || |||| Sbjct 2142 GGTTCTTACGCGTTACTCACCCATCCGCCACT------GGAAACACCA-----CTTC--- 2187 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 2188 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 2234 >seq3447 Length=41424 Score = 239 bits (264), Expect = 1e-60 Identities = 299/407 (73%), Gaps = 30/407 (7%) Strand=Plus/Plus Query 8 ACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTG 67 |||||||| ||||| ||| | | |||||||||| || | |||||||| ||| ||||||| Sbjct 11008 ACAACCCGTAGGCCATCTACCTCCACGCGGCATTACTCCGTCAGGCTTTCGCACATTGTG 11067 Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 || | |||||||||||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 11068 GAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGTGGC 11127 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || ||||||| || ||| ||||| |||| |||||| ||| || ||| | | |||||| Sbjct 11128 TGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGTAAGCTATTGCTTCACCAACT 11187 Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247 |||||||| | | | | ||| | | ||| || ||| ||| |||| || Sbjct 11188 AGCTAATCAGACGCGAGCCCCTCC--TCGGGAG------GA--TTCCTCCT-TTTGCTCC 11236 Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTT 307 | | | | | ||||||||| ||||||||||| ||| | ||||||| ||||| | Sbjct 11237 TCAGCC--AACGGGGTATTAGCAACCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGT 11294 Query 308 TCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367 || | | ||||||||||||||||||| ||| || || |||| | Sbjct 11295 TCTTACGCGCTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCAT---- 11339 Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||||||||||||||| || ||||||||||||||| ||||| Sbjct 11340 --GTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 11384 Score = 154 bits (170), Expect = 4e-35 Identities = 239/340 (70%), Gaps = 30/340 (9%) Strand=Plus/Plus Query 75 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT 134 ||||| ||||| |||| |||||||||||| |||||| ||| | ||||||||| || |||| Sbjct 7790 CCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCAT 7849 Query 135 CCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||| ||||||||| |||| | |||| ||| || ||| | | |||||||| |||| Sbjct 7850 CCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAAT 7909 Query 195 CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACG 254 | | | | ||| ||| || ||| ||| |||| || | | | Sbjct 7910 CAGACTCAAGCCCCTCC----TCGAGCGG------ATTCCTCCT-TTTGCTCCTCAGCC- 7957 Query 255 TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGA 314 || | ||||||||| ||||||||||| ||| | | ||||| |||||| ||| | Sbjct 7958 -TACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTTCTTACG 8016 Query 315 CATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCG 374 | ||||| |||||||||||||| ||| || || |||| ||||||| Sbjct 8017 CGTTACTTACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTTCG 8059 Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||| || |||||| ||| |||| ||||| Sbjct 8060 ACTTGCATGTGTTAAGCATGCCGCTAGCATTCATCCTGAG 8099 >seq3132 Length=44694 Score = 185 bits (204), Expect = 2e-44 Identities = 152/184 (83%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 13 CCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA-TTGTGCAAT 71 ||| ||||||||| | | || ||||||| ||| | |||||||| |||||| ||| || Sbjct 3228 CCGTAGGCCTTCTACCTCCATGCGGCATTGCTCCGTCAGGCTTTCGCCCAATTGCAGAAA 3287 Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 |||||||||| |||||||| |||||||||||| || ||||||||| |||||||||||| | Sbjct 3288 ATTCCCCACTACTGCCTCCAGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGAT 3347 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| ||||||||| |||| |||||| || || ||| || | |||||||||| Sbjct 3348 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGCTATTGCCTCACCAACTAGCT 3407 Query 192 AATC 195 |||| Sbjct 3408 AATC 3411 >seq12648 Length=11425 Score = 140 bits (154), Expect = 8e-31 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||||| || ||||||||||||| |||||||||||||||||| |||||||||| ||| Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 |||| |||| |||| |||| ||||||||| |||| | |||| ||| || ||| || | Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860 Query 181 GCCAACTAGCTAATC 195 |||||||||||||| Sbjct 859 ACCAACTAGCTAATC 845 >seq1 Length=548636 Score = 134 bits (148), Expect = 3e-29 Identities = 240/347 (69%), Gaps = 35/347 (10%) Strand=Plus/Plus Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 ||||||||||||| ||||| |||||||||||| | |||||||||| |||||||||||| | Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| ||||| | | |||| || ||| || || ||| || | |||||||||| Sbjct 27058 CATCCTCTCGGACCAAC-ATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116 Query 192 AATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCG 251 |||| | || | | || |||| || ||| ||| |||| || | | Sbjct 27117 AATCAAACGTGAGCCCCTCTTCGAGTG-GA---------TTCCTCCT-TTTGCTCCTCAG 27165 Query 252 ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC 311 | || | ||||||||| | ||||||| ||| | ||||||| ||||| ||| Sbjct 27166 CC--TACGGGGTATTAGCAGCTGTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTTCTT 27223 Query 312 AGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGT 371 | ||||||||| |||| ||||| ||| || || |||| |||| Sbjct 27224 ATGTGTTACTCACCTGTCCACCACT------GGAAACACCA-----CTTC------CCGT 27266 Query 372 TCGACTTGCATGTG----TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||| ||| || |||||||||| |||| ||||| Sbjct 27267 CTGACTTGCATGTGTTAATTAAGCATGCCGCCAGCATTCATCCTGAG 27313 >seq4303 Length=34690 Score = 80.6 bits (88), Expect = 6e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||| |||||||| ||| |||||||||| | |||||||||||| |||||| Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033 >seq73673 Length=787 Score = 77.0 bits (84), Expect = 8e-12 Identities = 69/86 (80%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| || ||| || |||| ||| ||||| ||||| Sbjct 702 CTTTACAAGCGGCATTGCCCTTCTTCACTCAAGCGATATTGCTGGATCGGGCTTTCGCCC 761 Query 62 ATTGTGCAATATTCCCCACTGCTGCC 87 ||||| ||| |||||||||||||||| Sbjct 762 ATTGTCCAAGATTCCCCACTGCTGCC 787 >seq3337 Length=42490 Score = 77.0 bits (84), Expect = 8e-12 Identities = 60/72 (83%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | || Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973 Query 184 AACTAGCTAATC 195 |||||||||||| Sbjct 6972 AACTAGCTAATC 6961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1218636572672