Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 262 1e-67
seq3447 239 1e-60
seq3132 185 2e-44
seq12648 140 8e-31
seq1 134 3e-29
seq4303 80.6 6e-13
seq73673 77.0 8e-12
seq3337 77.0 8e-12
>seq4906
Length=31215
Score = 262 bits (290), Expect = 1e-67
Identities = 305/410 (74%), Gaps = 30/410 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 1855 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1914
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||| ||||| |||||||
Sbjct 1915 GAGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTATCAGTCCCAGTGT 1974
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| |||| |||
Sbjct 1975 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCCCACCA 2034
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| ||| || ||| ||| ||||
Sbjct 2035 ACTAGCTAATCAGACGCGAGCCCCTCCTCGGGTG-GA---------TTCCTCCT-TTTGC 2083
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| || ||||||| ||| | ||||||| ||||
Sbjct 2084 TCCTCAGCC--TACGGGGTATTAGCAGCCATTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 2141
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||| ||||||||| ||| || || ||||
Sbjct 2142 GGTTCTTACGCGTTACTCACCCATCCGCCACT------GGAAACACCA-----CTTC--- 2187
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 2188 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 2234
>seq3447
Length=41424
Score = 239 bits (264), Expect = 1e-60
Identities = 299/407 (73%), Gaps = 30/407 (7%)
Strand=Plus/Plus
Query 8 ACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTG 67
|||||||| ||||| ||| | | |||||||||| || | |||||||| ||| |||||||
Sbjct 11008 ACAACCCGTAGGCCATCTACCTCCACGCGGCATTACTCCGTCAGGCTTTCGCACATTGTG 11067
Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127
|| | |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 11068 GAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTTAGTTCCAGTGTGGC 11127
Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187
|| ||||||| || ||| ||||| |||| |||||| ||| || ||| | | ||||||
Sbjct 11128 TGATCATCCTATCGGACGAGCTACTGATCATCGCCTTGGTAAGCTATTGCTTCACCAACT 11187
Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247
|||||||| | | | | ||| | | ||| || ||| ||| |||| ||
Sbjct 11188 AGCTAATCAGACGCGAGCCCCTCC--TCGGGAG------GA--TTCCTCCT-TTTGCTCC 11236
Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTT 307
| | | | | ||||||||| ||||||||||| ||| | ||||||| ||||| |
Sbjct 11237 TCAGCC--AACGGGGTATTAGCAACCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGT 11294
Query 308 TCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367
|| | | ||||||||||||||||||| ||| || || |||| |
Sbjct 11295 TCTTACGCGCTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTCAT---- 11339
Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| |||||||||||||||| || ||||||||||||||| |||||
Sbjct 11340 --GTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 11384
Score = 154 bits (170), Expect = 4e-35
Identities = 239/340 (70%), Gaps = 30/340 (9%)
Strand=Plus/Plus
Query 75 CCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT 134
||||| ||||| |||| |||||||||||| |||||| ||| | ||||||||| || ||||
Sbjct 7790 CCCCATTGCTGACTCCTGTAGGAGTCTGGGCCGTGTATCAATCCCAGTGTGGTTGATCAT 7849
Query 135 CCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
|||||| ||||||||| |||| | |||| ||| || ||| | | |||||||| ||||
Sbjct 7850 CCTCTCGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGTCTCACCAACTAGATAAT 7909
Query 195 CCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACG 254
| | | | ||| ||| || ||| ||| |||| || | | |
Sbjct 7910 CAGACTCAAGCCCCTCC----TCGAGCGG------ATTCCTCCT-TTTGCTCCTCAGCC- 7957
Query 255 TTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGA 314
|| | ||||||||| ||||||||||| ||| | | ||||| |||||| ||| |
Sbjct 7958 -TACGGGGTATTAGCAGCCGTTTCCAGTTGTTGTTCGCCTCCCAAAGGCAGGTTCTTACG 8016
Query 315 CATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCG 374
| ||||| |||||||||||||| ||| || || |||| |||||||
Sbjct 8017 CGTTACTTACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTTCG 8059
Query 375 ACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||||| || |||||| ||| |||| |||||
Sbjct 8060 ACTTGCATGTGTTAAGCATGCCGCTAGCATTCATCCTGAG 8099
>seq3132
Length=44694
Score = 185 bits (204), Expect = 2e-44
Identities = 152/184 (83%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 13 CCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA-TTGTGCAAT 71
||| ||||||||| | | || ||||||| ||| | |||||||| |||||| ||| ||
Sbjct 3228 CCGTAGGCCTTCTACCTCCATGCGGCATTGCTCCGTCAGGCTTTCGCCCAATTGCAGAAA 3287
Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131
|||||||||| |||||||| |||||||||||| || ||||||||| |||||||||||| |
Sbjct 3288 ATTCCCCACTACTGCCTCCAGTAGGAGTCTGGGCCATGTCTCAGTCCCAGTGTGGCTGAT 3347
Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191
||||||||| ||||||||| |||| |||||| || || ||| || | ||||||||||
Sbjct 3348 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGAAAGCTATTGCCTCACCAACTAGCT 3407
Query 192 AATC 195
||||
Sbjct 3408 AATC 3411
>seq12648
Length=11425
Score = 140 bits (154), Expect = 8e-31
Identities = 112/135 (83%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120
||||||| || ||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 979 CATTGTGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCGTGTCTCAGCCCCA 920
Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180
|||| |||| |||| |||| ||||||||| |||| | |||| ||| || ||| || |
Sbjct 919 GTGTAGCTGATCATTCTCTTGGACCAGCTACTGATCATTGCCTTGGTAAGCTATTGCCTC 860
Query 181 GCCAACTAGCTAATC 195
||||||||||||||
Sbjct 859 ACCAACTAGCTAATC 845
>seq1
Length=548636
Score = 134 bits (148), Expect = 3e-29
Identities = 240/347 (69%), Gaps = 35/347 (10%)
Strand=Plus/Plus
Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131
||||||||||||| ||||| |||||||||||| | |||||||||| |||||||||||| |
Sbjct 26998 ATTCCCCACTGCTACCTCCTGTAGGAGTCTGGGCAGTGTCTCAGTCCCAGTGTGGCTGAT 27057
Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191
||||||||| ||||| | | |||| || ||| || || ||| || | ||||||||||
Sbjct 27058 CATCCTCTCGGACCAAC-ATTGATCATCACCTTGGCAAGCTATTGCCTCACCAACTAGCT 27116
Query 192 AATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCG 251
|||| | || | | || |||| || ||| ||| |||| || | |
Sbjct 27117 AATCAAACGTGAGCCCCTCTTCGAGTG-GA---------TTCCTCCT-TTTGCTCCTCAG 27165
Query 252 ACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCC 311
| || | ||||||||| | ||||||| ||| | ||||||| ||||| |||
Sbjct 27166 CC--TACGGGGTATTAGCAGCTGTTTCCAACTGTTGTTCCCCTCCCAAGGGCAGGTTCTT 27223
Query 312 AGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGT 371
| ||||||||| |||| ||||| ||| || || |||| ||||
Sbjct 27224 ATGTGTTACTCACCTGTCCACCACT------GGAAACACCA-----CTTC------CCGT 27266
Query 372 TCGACTTGCATGTG----TTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||||||| ||| || |||||||||| |||| |||||
Sbjct 27267 CTGACTTGCATGTGTTAATTAAGCATGCCGCCAGCATTCATCCTGAG 27313
>seq4303
Length=34690
Score = 80.6 bits (88), Expect = 6e-13
Identities = 53/59 (90%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
||||||||||||| |||||||| ||| |||||||||| | |||||||||||| ||||||
Sbjct 26975 CACTGCTGCCTCCTGTAGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCC 27033
>seq73673
Length=787
Score = 77.0 bits (84), Expect = 8e-12
Identities = 69/86 (80%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| || ||| || |||| ||| ||||| |||||
Sbjct 702 CTTTACAAGCGGCATTGCCCTTCTTCACTCAAGCGATATTGCTGGATCGGGCTTTCGCCC 761
Query 62 ATTGTGCAATATTCCCCACTGCTGCC 87
||||| ||| ||||||||||||||||
Sbjct 762 ATTGTCCAAGATTCCCCACTGCTGCC 787
>seq3337
Length=42490
Score = 77.0 bits (84), Expect = 8e-12
Identities = 60/72 (83%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||
Sbjct 7032 TGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACC 6973
Query 184 AACTAGCTAATC 195
||||||||||||
Sbjct 6972 AACTAGCTAATC 6961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1218636572672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |