Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4906 311 3e-82 seq3132 259 1e-66 seq3447 244 3e-62 seq73673 181 3e-43 seq12648 149 2e-33 seq1 122 3e-25 seq6320 95.1 4e-17 seq3337 93.3 1e-16 seq158 82.4 2e-13 seq4303 75.2 3e-11 >seq4906 Length=31215 Score = 311 bits (344), Expect = 3e-82 Identities = 276/343 (80%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| || || |||||||||||||| |||||||||| | Sbjct 2052 CGCGTCTGATTAGCTAGTTGGTGGGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 1993 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| ||||| |||||| ||| ||||||||||||||||| Sbjct 1992 CCGAGAGGATGATCAGCCACACTGGGACTGATACACGGCCCAGACTCCTACGGGAGGCAG 1933 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 1932 CAGTGGGGAATTTTCCTCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 1873 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||||| || ||| | | | ||||| ||||| |||| || ||| Sbjct 1872 AGGCCTACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGATGGTATCTGGGGAAT 1813 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||| Sbjct 1812 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCAT 1753 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 1752 GAATGA-TTGGGCGTAAAGAGTCTGTAGGTGGCTTTTTAAGTC 1711 >seq3132 Length=44694 Score = 259 bits (286), Expect = 1e-66 Identities = 266/344 (77%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||| ||||||||| |||||||||| | Sbjct 3418 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTTCCAAGGCGATGATCAGTAGCTGGT 3359 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| ||||||||| || ||| |||||||| |||||||| Sbjct 3358 CCGAGAGGATGATCAGCCACACTGGGACTGAGACATGGCCCAGACTCCTACTGGAGGCAG 3299 Query 280 CAGTGGGGAATATTGCACAA-TGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||||||| || ||| ||||| ||||||||| | ||||| ||||| || | | Sbjct 3298 TAGTGGGGAATTTTCTGCAATTGGGCGAAAGCCTGACGGAGCAATGCCGCATGGAGGTAG 3239 Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAG 396 ||||||| ||| || | || || | | | ||||| |||||||||| || ||| Sbjct 3238 AAGGCCTACGGCTCATGAACTTCGTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAA 3179 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| |||||||| ||||| |||||||||||||| ||| || | ||||||| Sbjct 3178 TAAGCATTGGCTAACTCTATGCCAACAGCCGCGGTAATATAGAGGATGCAAACGTTATCT 3119 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | | |||||||||| || |||||||| || ||||||| Sbjct 3118 GGAATGA-TTGGGCGTAAAGTGTCTGTAGGTGGCTTTTTAAGTC 3076 >seq3447 Length=41424 Score = 244 bits (270), Expect = 3e-62 Identities = 271/356 (76%), Gaps = 18/356 (5%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGC-CGA 218 |||||||||||||||||||||| | | || |||||||||||||| |||||||||| || Sbjct 11202 CGCGTCTGATTAGCTAGTTGGTGAAGCAATAGCTTACCAAGGCGATGATCAGTAGCTCGT 11143 Query 219 CCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCA 278 || || ||| ||||| |||||| ||||||| |||||||| ||| ||||||| |||||||| Sbjct 11142 CC-GATAGGATGATCAGCCACACTGGAACTAAGACACGGCCCAGACTCCTATGGGAGGCA 11084 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||||||| | || ||||||| || ||||||||| | || || |||||||| | | Sbjct 11083 GCAGTGGGGACTTTTCCACAATGTGCGAAAGCCTGACGGAGTAATGCCGCGTGGAGGTAG 11024 Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG-GAAGA--TAATGACGGTACTTGAGGA 395 | ||||| ||||| || | ||| | | || | ||||| ||||| ||| || ||| Sbjct 11023 ATGGCCTACGGGTTGTGATCTTCTTTTC-CAGGAGAAGAAGCAATGATTGTATCTGGGGA 10965 Query 396 GGAAGCCCCGGCTAACTACG-----------TGCCAGCAGCCGCGGTAATACGTAGGGGG 444 |||| ||||||||| || ||||||||||| | ||||||| ||| | Sbjct 10964 ATAAGCATCGGCTAACTCCGTGCCAACTCCATGCCAGCAGCCACAGTAATACAGAGGATG 10905 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | ||||||||| ||||| | | || |||||| || |||||||| || ||||||| Sbjct 10904 CAAGCGTTATCTGGAATGA-TTAGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 10850 Score = 118 bits (130), Expect = 3e-24 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||||||||| ||||||||| || || |||||||||||| | |||||||||| | | | Sbjct 7914 GTCTGATTATCTAGTTGGTGAGACAATAGCTTACCAAGGCAATGATCAGTAGCTGGTCCG 7855 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| ||||| ||| | ||| |||||| ||| |||||||| |||| ||||| Sbjct 7854 AGAGGATGATCAACCACACTGGGATTGATACACGGCCCAGACTCCTACAGGAGTCAGCAA 7795 Query 283 TGGGG 287 ||||| Sbjct 7794 TGGGG 7790 >seq73673 Length=787 Score = 181 bits (200), Expect = 3e-43 Identities = 174/220 (79%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGC 334 |||||||||||||||| ||| ||||||||| |||||| ||| |||||| ||| |||| Sbjct 787 GGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCTTGAGT 728 Query 335 GATGAAGGCC--TTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTT 390 || ||||| | | | | | |||||||||| || || || | || ||||| | ||| Sbjct 727 GAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTC 668 Query 391 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 450 ||||| |||||||||||||||| ||||||||||||| |||||| ||| |||||| || | Sbjct 667 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCTCGGTAAGACGGGGGGGGCAAGTG 608 Query 451 TTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || | | |||| ||| |||||||||||| |||||| ||| Sbjct 607 TTCTTCAGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 569 >seq12648 Length=11425 Score = 149 bits (164), Expect = 2e-33 Identities = 118/142 (83%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||| | |||||||||| | Sbjct 838 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCAATGATCAGTAGCTGGT 897 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||| ||||| || ||| ||| |||||||||| ||| |||||||||||||| || Sbjct 898 CCAAGAGAATGATCAGCTACACTGGGGCTGAGACACGACCCAGACTCCTACGGGAGGTAG 957 Query 280 CAGTGGGGAATATTGCACAATG 301 ||||||||||| || ||||||| Sbjct 958 CAGTGGGGAATTTTCCACAATG 979 >seq1 Length=548636 Score = 122 bits (134), Expect = 3e-25 Identities = 105/129 (81%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 ||| |||||||||||||||| ||| || |||| |||||| || ||||| | | || Sbjct 27125 CGTTTGATTAGCTAGTTGGTGAGGCAATAGCTTGCCAAGGTGATGATCAATGTTGGTCC- 27067 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||| | ||| |||||||| ||||| |||| Sbjct 27066 GAGAGGATGATCAGCCACACTGGGACTGAGACACTGCCCAGACTCCTACAGGAGGTAGCA 27007 Query 282 GTGGGGAAT 290 ||||||||| Sbjct 27006 GTGGGGAAT 26998 >seq6320 Length=24830 Score = 95.1 bits (104), Expect = 4e-17 Identities = 83/102 (81%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| | ||||||| |||||||||||||||||||||| Sbjct 4548 AATGACGGTATCTGGGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 4489 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 ||| || ||||||||||||||| | | |||||||||| || Sbjct 4488 GAGGATGCAAGCGTTATCCGGAATGA-TTGGGCGTAAAGCGT 4448 >seq3337 Length=42490 Score = 93.3 bits (102), Expect = 1e-16 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 6954 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 7013 Query 220 CTGAGAGGGTGATCGGCCA 238 | |||||| ||||| |||| Sbjct 7014 CCGAGAGGATGATCAGCCA 7032 Score = 78.8 bits (86), Expect = 3e-12 Identities = 66/81 (81%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || ||| |||| ||||||||| || ||||||||||||||||||| Sbjct 7488 AATGACGGTATCTGGGGAATAAGCATCGGCTAACTCTGTACCAGCAGCCGCGGTAATACA 7547 Query 438 TAGGGGGCTAGCGTTATCCGG 458 ||| || |||||||||||| Sbjct 7548 GAGGATGCAAGCGTTATCCGG 7568 >seq158 Length=172821 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||||||||| ||| || |||||||||||||| |||||||||| | | Sbjct 53354 GCATCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTC 53413 Query 221 TGAGAGGGTG 230 ||||||| || Sbjct 53414 TGAGAGGATG 53423 >seq4303 Length=34690 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 || ||||| |||||| ||| | |||||||||| |||||||||||| ||||||||||||| Sbjct 27033 GGATGATCAGCCACACTGGGATTGAGACACGGCCCAAACTCCTACAGGAGGCAGCAGTG 26975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1492989308928