Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq4906 260 3e-67 seq3447 237 4e-60 seq7991 143 6e-32 seq12648 127 5e-27 seq17567 125 2e-26 seq73673 114 3e-23 seq2355 114 3e-23 seq19579 111 4e-22 seq3132 95.1 3e-17 seq6320 89.7 1e-15 seq16716 87.8 4e-15 seq5502 73.4 9e-11 >seq4906 Length=31215 Score = 260 bits (288), Expect = 3e-67 Identities = 306/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 1820 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 1761 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||| |||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 1760 GTTATCATGAATGATTGGGCGTAAAGAGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 1701 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | | |||| ||||| || || | | || ||||| | ||| |||| | | |||||| Sbjct 1700 TCCCAGGGCTTAACCCTGG-ACAGGTGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGC 1642 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||| ||| |||||||||||||||||| || | | |||||||| ||||| Sbjct 1641 AGAGGGAATTTTCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGA 1582 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || |||||| | | |||||||||||| ||||||| ||||| |||| |||| Sbjct 1581 AAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAACAAATGGGAT 1522 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT----CGGGGCGCATA 359 ||||||||| ||||||| ||||||||||||| |||||||| || || | || || Sbjct 1521 TAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGTTGTGCGTGTCG-ATC 1463 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 1462 CGTG---CAGTGCTGTAGCTAACGCGTTAAGTATCCCTCCTGGGGAGTA 1417 >seq3447 Length=41424 Score = 237 bits (262), Expect = 4e-60 Identities = 289/392 (74%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 21 GCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACT 80 || |||| | ||||||||||| | ||||||| ||| || ||||||||| ||||| | | Sbjct 10943 GCCAACTCCATGCCAGCAGCCACAGTAATACAGAGGATGCAAGCGTTATCTGGAATGATT 10884 Query 81 GGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCC 140 || |||||| || |||||||| || ||||||| | || ||| ||| |||||||||| Sbjct 10883 AGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCTGTCAAATCCTAGGGCTCAACCC 10824 Query 141 CGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTG 200 || || | |||||| | ||| |||| | | ||||||| |||||| | ||| Sbjct 10823 TGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTG 10764 Query 201 TAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACT 260 |||||||||||||||||| || | | |||| ||| |||||| || | |||| | Sbjct 10763 GAGCGGTGAAATGCGTAGAGATCGGAAAGAACTCCAACGGCGAAAGCACTCTACTGGGCC 10704 Query 261 GTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTC 320 | |||||||||||| |||||| |||||||||| |||||||||||| |||||| Sbjct 10703 GACACTGACACTGAGAGATGAAAGCTAGGGGAGCAAATGAGATTAGATACCCCAGTAGTC 10644 Query 321 CACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT----AAGTGCTCCGGTGCCGCA 376 | |||||||| |||| |||||||| | | | ||| || |||| | |||| | | Sbjct 10643 CTAGCCGTAAATGATGGATACTAGGCG-CTGTGCGTATCGACCAGTG---CAGTGCTGTA 10588 Query 377 GCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || |||||| ||||||| || ||||||||||| Sbjct 10587 GCTAACGCATTAAGTATCCCGCCTGGGGAGTA 10556 >seq7991 Length=19622 Score = 143 bits (158), Expect = 6e-32 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 |||||||||||||||||| || || | |||||||| |||||| || |||||| | | Sbjct 9164 AGCGGTGAAATGCGTAGAGATCAGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCG 9223 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 ||||||| |||| ||||||| | |||||||| ||||||||||||| ||||||| Sbjct 9224 ACACTGACATTGAGAGACGAAAGCTAGTGGAGCAAATGGGATTAGATACCCCAGTAGTCC 9283 Query 322 ACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAA 380 ||||||||||||| |||||||| | | | ||| || || | | |||| | ||| | Sbjct 9284 TAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCAACCCGTGCAGTGCTGTAGCTA 9342 Query 381 ACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| ||||||| | ||||||||||| Sbjct 9343 ACGTGTTAAGTATCCTGCCTGGGGAGTA 9370 >seq12648 Length=11425 Score = 127 bits (140), Expect = 5e-27 Identities = 163/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||||| ||| || | ||||||||||||| || | | ||||| || ||| || || Sbjct 2287 AATTCCG-GTGGAGTGATGAAATGCGTAGAGATCGGAAAGAACATCAACGGCAAAAGCAC 2345 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 |||| | | | ||| |||||||| ||||||| |||||||||| |||||||||| Sbjct 2346 TCTGCTAGGCCGACACTAACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATA 2405 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA---AGTGCTC 366 ||| ||||||| ||||||||||||| |||||||| || | ||||| | | Sbjct 2406 CCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG---CGATGTGCATATCGACCTGTG 2462 Query 367 CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 2463 CAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 2504 >seq17567 Length=6860 Score = 125 bits (138), Expect = 2e-26 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 202 AGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTG 261 |||||| ||||||||||| || | | |||||||| |||||| || | |||| | | Sbjct 2817 AGCGGTAAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTACTGGGCCG 2876 Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 ||||||| |||| ||||||| |||||| ||| ||||||||||||| |||||| Sbjct 2877 ACACTGACATTGAGAGACGAAAGCTAGGGGAGAAAATGGGATTAGATACCCCAGTAGTCA 2936 Query 322 ACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAA 380 ||||||||||||| |||||||| | | ||| || | | | |||| | ||| | Sbjct 2937 TAGCCGTAAACGATGGATACTAGGCG-CTCTGCGTATCGACCCATGCAGTGCTGTAGCTA 2995 Query 381 ACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| ||||||| || ||||||||||| Sbjct 2996 ACGCGTTAAGTATCCCGCCTGGGGAGTA 3023 >seq73673 Length=787 Score = 114 bits (126), Expect = 3e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| ||||||||||||| |||||| ||| |||||| Sbjct 671 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCTCGGTAAGACGGGGGGGGCA 612 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||| | | |||| ||||||||||||||| |||||| ||| Sbjct 611 AGTGTTCTTCAGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 569 >seq2355 Length=54213 Score = 114 bits (126), Expect = 3e-23 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 ||||| | | |||||||||||| ||||||| |||||||||| ||||||||||||| Sbjct 37904 GCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCC 37963 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTG 371 ||||||| ||||||||||||| |||||||| | | | ||| || | | | ||| Sbjct 37964 CAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAGTG 38022 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| ||||| ||||||| || ||||||||||| Sbjct 38023 CTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 38059 >seq19579 Length=5662 Score = 111 bits (122), Expect = 4e-22 Identities = 121/158 (77%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| ||||| |||| |||||||||||| Sbjct 490 TGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAACAAATGGGATTAGATACC 431 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGT 370 | ||||||| ||||||||||||| |||||||| | | | ||| || | | | || Sbjct 430 CCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCCGTGCAGT 372 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | ||| ||||| ||||||| || ||||||||||| Sbjct 371 GCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 334 >seq3132 Length=44694 Score = 95.1 bits (104), Expect = 3e-17 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 79 |||||||| ||||| |||||||||||||| ||| || | ||||||| ||||| | Sbjct 3170 GGCTAACTCTATGCCAACAGCCGCGGTAATATAGAGGATGCAAACGTTATCTGGAATGAT 3111 Query 80 TGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACC 139 ||||||||||| || |||||||| || ||||||| || || | | |||| |||| Sbjct 3110 TGGGCGTAAAGTGTCTGTAGGTGGCTTTTTAAGTCCCCCGTCCAATCCCAGGGCTGAACC 3051 Query 140 CCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGT 199 | || || | |||||| | ||| |||| | | ||||||| |||||| | || Sbjct 3050 CTGGACAGGCAGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGT 2991 Query 200 GTAGCGGTGA 209 | || || || Sbjct 2990 GGAGTGGAGA 2981 >seq6320 Length=24830 Score = 89.7 bits (98), Expect = 1e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | ||||||| |||||||||||||||||||||| ||| || ||| Sbjct 4536 TGGGGAATAAGCATCTGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 4477 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGT 93 |||||||||||| | ||||||||||| || Sbjct 4476 GTTATCCGGAATGATTGGGCGTAAAGCGT 4448 >seq16716 Length=7461 Score = 87.8 bits (96), Expect = 4e-15 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 |||| |||||||||||| |||||||| | | ||||||| | || || ||||| Sbjct 1853 AGTGAAGCGGTGAAATGTGTAGATATCAAAAAGAACACCTACAACTAAAGCACTCTGCTG 1794 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGT 316 | | | || |||||||| ||||||| | |||||||||| |||||||||| | || Sbjct 1793 GGCCGACACCAACACTGAGAGACGAAAGC-TAGGGAGCAAACGAGATTAGATACTCCAGT 1735 Query 317 AGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 | ||| ||||||| ||| |||||||| | | | |||||| Sbjct 1734 AATCCTAACCGTAAATAATGGATACTAGGCG-CTGTGCGCAT 1694 >seq5502 Length=28245 Score = 73.4 bits (80), Expect = 9e-11 Identities = 67/85 (79%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||||||||||||||| | ||||||||||| || |||||||| || |||| || | Sbjct 18506 GCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAATCCGCC 18565 Query 119 GTGAAAGGCTATGGCTCAACCCCGG 143 || ||| | | |||||||||| || Sbjct 18566 GTCAAATCCCAGGGCTCAACCCTGG 18590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199495684096