Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7896 250 5e-64 seq839 208 1e-51 seq811 145 1e-32 seq7290 109 1e-21 seq263993 73.4 7e-11 >seq7896 Length=19876 Score = 250 bits (276), Expect = 5e-64 Identities = 187/218 (86%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 111 GAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 7135 GAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCTCACGCGCGCTACACTGA 7194 Query 171 CAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC 230 | |||||||| || ||||||||| ||| | |||||||||| | ||| | | Sbjct 7195 TGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATT 7253 Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| |||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||| Sbjct 7254 GTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGA 7313 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| || ||||| ||||||||||| ||||||| Sbjct 7314 GTCATCAGCTCGTGTTGACTACGTCCCTGCTCTTTGTA 7351 >seq839 Length=95879 Score = 208 bits (230), Expect = 1e-51 Identities = 201/254 (79%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC-----CGCTTTGGCGGGTCGCCGGCTT 74 || |||||||| | |||||||| |||| | || | | | |||| || |||| Sbjct 9658 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTCTCCTCCGCGG----CCAGCTT 9603 Query 75 CTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||||| | ||| | ||| | ||||||||||||||||||||||||| |||| Sbjct 9602 CTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTATGAT 9544 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||| ||||||||| ||| | |||||||| || || Sbjct 9543 GCCCTTAGATGTTCTGGGCCGCACGCTCGCTACACTAACATATTCAACGAGTCTATAGCC 9484 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 || |||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 9483 TTAGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 9425 Query 253 ATTATTGCTCTTCA 266 ||| ||| |||||| Sbjct 9424 ATTGTTGGTCTTCA 9411 >seq811 Length=97684 Score = 145 bits (160), Expect = 1e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||| ||| ||||||||||||||| |||||||||||| Sbjct 33093 TCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGC 33152 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| |||||||| ||||||||||||||||||| Sbjct 33153 GAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 33192 >seq7290 Length=21712 Score = 109 bits (120), Expect = 1e-21 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||||||| | ||| | | ||| || |||||| ||||||| || ||| |||| | Sbjct 7076 TGGGTAATCTT-TGAAATTTCATGGTGATGACGATAGATCATTGCAGTTGTTGGTCTTTA 7134 Query 267 ACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTG 326 ||||||||| ||||||||||| | | ||||| | ||||||||| |||||| ||| ||||| Sbjct 7135 ACGAGGAATTCCTAGTAAGCGTGAGCCATCAACTCGCGTTGATGACGTCCTTGCTCTTTG 7194 Query 327 TA 328 || Sbjct 7195 TA 7196 >seq263993 Length=216 Score = 73.4 bits (80), Expect = 7e-11 Identities = 69/87 (79%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || || | ||||| | | | |||||||||| | ||| | ||||| |||||||||| | Sbjct 211 ATAACTTAGGCCGACAAGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATC 153 Query 247 ATTGCAATTATTGCTCTTCAACGAGGA 273 ||||||||| ||| ||||||||||||| Sbjct 152 ATTGCAATTGTTGGTCTTCAACGAGGA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944283836416