Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq750 149 2e-33 seq1861 140 1e-30 seq2006 116 1e-23 seq272 91.5 5e-16 seq4032 89.7 2e-15 seq137 89.7 2e-15 seq4906 80.6 9e-13 >seq750 Length=101112 Score = 149 bits (164), Expect = 2e-33 Identities = 339/503 (67%), Gaps = 33/503 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | |||||||||| | | |||||||| ||||| Sbjct 67193 CGAGTCTTCATAGGGCAATTGTCACTGCTTATAGACCCGAACCTAGGTGATCTATCCATG 67252 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 67253 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 67312 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||||| ||||| ||||||||||| || | | ||| || | ||| |||||| Sbjct 67313 AGCAGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTGGCTAGTTCTCC 67372 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGT--AT--CACCATC-GGGGGTAGAGCACTGTT 236 |||||| || |||| | |||| || |||| |||||| ||||||||| Sbjct 67373 CCGAAATGCGTTGAGGT----GCAGAAGTTGATTGGGACATCTAGGGGTAAAGCACTGTT 67428 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | |||| ||||||| | ||||||| |||| | Sbjct 67429 TCGGTGCGGGCTGCGAGAGCGA--TACCAAATCGAGGCAAACTTTGAATACTAGATATGA 67486 Query 288 CATCAGTTTTACCG---------CGG-GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCG 337 | ||| | || | ||| ||||| |||| | |||| | | | || Sbjct 67487 CCTCAAAATAACAGGGTCAAGGTCGGCCAGTGAAACGGTGGGGGATAAGCTTCATCATCG 67546 Query 338 AGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAAC 397 ||||| || | ||||| | ||||||||||||| |||||| ||| ||| | | || Sbjct 67547 AGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATA--AAG 67604 Query 398 GAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAG 457 || || | ||| ||||||| |||| ||| | | |||||||||| | || |||||| Sbjct 67605 GAGGTAGGGGTGCAGAGACAGCGAGGAAGTTTTCCTAGAAGCAGCCA-CCCTTGAAAGAG 67663 Query 458 TGCGTAACAGCTCACTAGTCGAG 480 ||||||| |||||||| ||||| Sbjct 67664 TGCGTAATAGCTCACTGATCGAG 67686 >seq1861 Length=62895 Score = 140 bits (154), Expect = 1e-30 Identities = 385/579 (66%), Gaps = 32/579 (6%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 28597 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 28538 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||| ||||| ||| |||||||| ||| Sbjct 28537 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCTGAACCTACTGATGTTGAAGAATC 28478 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||||| ||||| ||||||||||| || | | ||| | |||||||||||| Sbjct 28477 AGCAGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCATAGCTAGCTGGTTCTCC 28418 Query 182 CCGAAAACTATTTAGGTAGTGC-CTCAAGTATCACCATC-GGGGGTAGAGCACTGTTATG 239 |||||| || ||| || | || || |||| |||||| |||| |||| | Sbjct 28417 CCGAAATGCGTTGAGGCGCAGCAGTTAACTA--GACATCTAGGGGTAAAGCATTGTTTCG 28360 Query 240 G-CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCAT 290 | | || || | ||| ||||||| | |||||||| |||| | | | Sbjct 28359 GTGTGGGCCGTGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCT 28302 Query 291 CAGTTTTACCG---------CGG-GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGA 340 || | || | ||| |||||| |||| | |||| | | | | ||| Sbjct 28301 CAAAATAACAGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTCCAGA 28242 Query 341 GGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAA 400 | || | ||||| | ||||||||||||| |||||| || | | | | || || Sbjct 28241 GAGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGATCTCTCAATGATA--AAGGAG 28184 Query 401 GTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGC 460 || | ||| ||||||| |||| ||| || | |||| ||||| | || |||||||| Sbjct 28183 GTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGTAGCCA-CCCTTGAAAGAGTGT 28125 Query 461 GTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTAC 520 |||| |||||||| ||||| || ||| || || | ||| |||| ||| | Sbjct 28124 GTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAATGGG--CTAAGCGATCTGC 28067 Query 521 CGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| ||||||| | | ||| |||||||||||||| Sbjct 28066 CGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 28029 >seq2006 Length=59971 Score = 116 bits (128), Expect = 1e-23 Identities = 362/548 (66%), Gaps = 37/548 (7%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||| | |||||||| ||||| ||||||||||| | ||| | || |||| Sbjct 44197 AGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 44256 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 ||| |||| ||| |||||||| ||| || |||||| ||||| ||||||||||| || Sbjct 44257 CGTCAAAACCGACTGATGTTGAAGAATCAGCAGATGAGTTGTGGTTAGGGGTGAAATGCC 44316 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 | | ||| || | | |||||||| |||||| | ||||| | | |||| | Sbjct 44317 ACTCGAACCCAGAGTTGGTTGGTTCTCCCCGAAATGCA-TTAGGGCG---CAGAAGT-TG 44371 Query 214 AC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAAC 267 || |||| |||||| ||||||||| | ||| | | ||| ||||||| Sbjct 44372 ACTAGACATCTAGGGGTAAAGCACTGTTTCAGTGCGGGCCGCGAGAGCG--GTACCAAAT 44429 Query 268 CATTGCAAACTCCGAATGC--------GCATCAGTTTTACCGCG----GG------AGTG 309 | |||||||| |||| | | ||| | || | | || | || Sbjct 44430 CGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGTCAAGGTTGGCCAATG 44489 Query 310 AGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGC 369 | |||| | ||| | | | |||||||| || | ||||| | ||||||||| Sbjct 44490 AAACGGTGGGGGATAAACTTCATCGTCGAGAGGAAAACAGCCCGGATCACTAGCTAAGGC 44549 Query 370 CCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTG 429 ||| ||||| ||| ||| | | || || || | ||| ||||||| |||| ||| Sbjct 44550 CCCTCAATGATCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTT 44607 Query 430 GCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGC 489 | | |||||||||| | || ||||||||||||| || ||||| ||||| || || Sbjct 44608 TCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGTTCACTGATCGAGCGCTCTTGC 44666 Query 490 GTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG-ATCG 548 | || || | |||| |||| ||| || |||| ||||||| | | ||| |||| Sbjct 44667 GCCGAAGATGAACGGG-GCTAAGCGATCTGCCAAAGCTGTGGGAT-GTAAAAATGCATCG 44724 Query 549 GTAGGGGA 556 |||||||| Sbjct 44725 GTAGGGGA 44732 >seq272 Length=148728 Score = 91.5 bits (100), Expect = 5e-16 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 63 CCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTA 122 ||||||||||| | ||| | || ||||||||| |||| | | |||||||| ||| | Sbjct 11230 CCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCTAACCGATTGATGTTGAAGAATCA 11289 Query 123 GGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 | |||| || ||||| ||||||||||| || | | ||| || |||||||||||| | Sbjct 11290 GCGGATAAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCC 11349 Query 183 CGAAA 187 ||||| Sbjct 11350 CGAAA 11354 Score = 84.2 bits (92), Expect = 7e-14 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || || ||||| | ||||||||||||| |||||| ||| ||| | | | Sbjct 11513 CGAGAGGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAATGATCGCTCAGTGATA--A 11570 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||| | |||| | | || | |||||| ||| | || |||| Sbjct 11571 AGGAGGTAAGGGTGCAGAGACAACCAGGAGGCTTGCCTAGAAGCAACCA-CCCTTGAAAG 11629 Query 456 AGTGCGTAACAGCTCACTAGTCGAG 480 ||||||||| |||||||| ||||| Sbjct 11630 AGTGCGTAATAGCTCACTGATCGAG 11654 >seq4032 Length=36571 Score = 89.7 bits (98), Expect = 2e-15 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||| | Sbjct 23068 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCACG 23127 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 23128 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 23187 Query 122 AGGGGATGAGCTGT 135 || ||||||| ||| Sbjct 23188 AGCGGATGAGTTGT 23201 >seq137 Length=177946 Score = 89.7 bits (98), Expect = 2e-15 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | ||||||| ||||| Sbjct 63633 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGATGATCTATCCATG 63574 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 || |||||||| || | || |||||||| ||||| ||| |||||||| ||| Sbjct 63573 ACCGGGATGAAGCACAAGTGAAACTAAGTGGAGGTCTGAACCGACTGATGTTGAAGAATC 63514 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || |||| || ||||| ||| ||||||| || | | ||| | |||||||||||| Sbjct 63513 AGTGGAT-AGTTGTGGTTAGAGGTGAAATGCCACTCGAACCCAAAGCTAGCTGGTTCTCC 63455 Query 182 CCGAAA 187 ||||| Sbjct 63454 TCGAAA 63449 >seq4906 Length=31215 Score = 80.6 bits (88), Expect = 9e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 413 AGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCAC 472 ||||||| |||| ||| || | |||||||||| | || ||| ||||||||| ||||||| Sbjct 601 AGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCC-TTGAAATAGTGCGTAATAGCTCAC 543 Query 473 TAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 | ||||| || ||| || || | ||| || ||| ||| ||||||| ||||| Sbjct 542 TGATCGAGCGCTCTTGCGCCGAAGATGAATGGGGAT-AAGCGATCTGCCGAAGCTGTGGG 484 Query 533 ATCATTTATATG-ATCGGTAGGGGAGC 558 || | | ||| |||||||||||||| Sbjct 483 ATG-TAAAAATGCATCGGTAGGGGAGC 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1684398194688