Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq272 125 1e-26 seq750 120 6e-25 seq2006 109 1e-21 >seq272 Length=148728 Score = 125 bits (138), Expect = 1e-26 Identities = 177/243 (73%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || || ||||| ||||||| ||| | ||| ||||| Sbjct 10571 GTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGG 10630 Query 71 AG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 || ||| ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 10631 AGCTGA--AAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCGAA 10682 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||| ||| ||| |||| |||| || ||| ||||||||||||||||| ||| Sbjct 10683 C--TGC-TGCTTAATCCATGGGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 10739 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| |||||| ||||||||||||||| || Sbjct 10740 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGTTGCGAGCGAAATGGGAGCAG 10799 Query 249 CCT 251 ||| Sbjct 10800 CCT 10802 >seq750 Length=101112 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | | || || ||||| ||||||| ||| | ||| |||| Sbjct 66569 GGTGGATACCTAGGCACTCAGAGAGGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 66628 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| | |||| || |||| ||| | Sbjct 66629 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCTGAATAGGTTAACC------TTTCGAA 66681 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||| ||| ||| |||| |||| || ||| |||||||||||||||| ||| Sbjct 66682 C--TGC-TGCTTAATCCATGGGTAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGT 66738 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||| ||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 66739 AGCCAGAGGAAAACAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 66798 Query 249 CCT 251 ||| Sbjct 66799 CCT 66801 >seq2006 Length=59971 Score = 109 bits (120), Expect = 1e-21 Identities = 174/245 (71%), Gaps = 11/245 (4%) Strand=Plus/Plus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| || | || ||| ||||| ||||||| ||| | ||| | Sbjct 43538 ATGGTGGATACCTAAGCACCCAAAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTTG 43597 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 |||||| | ||| | | | ||||| ||||| |||||| || |||| ||| | Sbjct 43598 GGGAGTT-GAAAATAAGCGTAGATCCAGAGATTCCCGAATAGGTTAACC------TTTCG 43650 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | | | |||| ||| ||| || | |||| | ||| |||||||||||||||| | Sbjct 43651 AAC--TAC-TGCTTAATCCATGGGCAGGCAAGAAACAACCTAGCGAACTGAAACATCTTA 43707 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 ||||| ||||||||||| ||| | |||||||| ||||| |||||||||||||||| Sbjct 43708 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGC 43767 Query 247 AGCCT 251 ||||| Sbjct 43768 AGCCT 43772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915572503552