Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq272 125 1e-26
seq750 120 6e-25
seq2006 109 1e-21
>seq272
Length=148728
Score = 125 bits (138), Expect = 1e-26
Identities = 177/243 (73%), Gaps = 13/243 (5%)
Strand=Plus/Plus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70
|||||| ||| ||| | || || ||||| ||||||| ||| | ||| |||||
Sbjct 10571 GTGGATACCTAGGCACCCAGAGATGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGG 10630
Query 71 AG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|| ||| ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 10631 AGCTGA--AAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACC------TTTCGAA 10682
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||| ||| ||| |||| |||| || ||| ||||||||||||||||| |||
Sbjct 10683 C--TGC-TGCTTAATCCATGGGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 10739
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| |||||| ||||||||||||||| ||
Sbjct 10740 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGTTGCGAGCGAAATGGGAGCAG 10799
Query 249 CCT 251
|||
Sbjct 10800 CCT 10802
>seq750
Length=101112
Score = 120 bits (132), Expect = 6e-25
Identities = 175/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | | || || ||||| ||||||| ||| | ||| ||||
Sbjct 66569 GGTGGATACCTAGGCACTCAGAGAGGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 66628
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| | |||| || |||| ||| |
Sbjct 66629 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCTGAATAGGTTAACC------TTTCGAA 66681
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||| ||| ||| |||| |||| || ||| |||||||||||||||| |||
Sbjct 66682 C--TGC-TGCTTAATCCATGGGTAGGCAAGAGACAACCTAGCGAACTGAAACATCTTAGT 66738
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||| ||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 66739 AGCCAGAGGAAAACAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 66798
Query 249 CCT 251
|||
Sbjct 66799 CCT 66801
>seq2006
Length=59971
Score = 109 bits (120), Expect = 1e-21
Identities = 174/245 (71%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| || | || ||| ||||| ||||||| ||| | ||| |
Sbjct 43538 ATGGTGGATACCTAAGCACCCAAAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTTG 43597
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
|||||| | ||| | | | ||||| ||||| |||||| || |||| ||| |
Sbjct 43598 GGGAGTT-GAAAATAAGCGTAGATCCAGAGATTCCCGAATAGGTTAACC------TTTCG 43650
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| | | |||| ||| ||| || | |||| | ||| |||||||||||||||| |
Sbjct 43651 AAC--TAC-TGCTTAATCCATGGGCAGGCAAGAAACAACCTAGCGAACTGAAACATCTTA 43707
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
||||| ||||||||||| ||| | |||||||| ||||| ||||||||||||||||
Sbjct 43708 GTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGGCGAGCGAAATGGGAGC 43767
Query 247 AGCCT 251
|||||
Sbjct 43768 AGCCT 43772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915572503552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |