Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq36124 697 0.0 seq839 670 0.0 seq2173 329 1e-87 seq17038 259 2e-66 seq6355 165 3e-38 seq5395 156 1e-35 seq39277 149 2e-33 seq7896 102 3e-19 seq7106 80.6 9e-13 seq11702 75.2 4e-11 >seq36124 Length=1942 Score = 697 bits (772), Expect = 0.0 Identities = 479/533 (90%), Gaps = 7/533 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 946 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 887 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 886 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAGCCCGGATC 827 Query 127 GGCCCGC-GAAGGAC-CTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 |||||| |||| | ||| | ||| ||| | || | ||| || |||| |||| Sbjct 826 AGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGACAGTGCC--CCGCCTCCGATTCA 769 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 || ||||||||| |||| ||| ||||||||||||||||| |||| || |||||||| Sbjct 768 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAA-GGCTCCCA 710 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 709 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 650 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 649 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 590 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 589 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 530 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 CATTTGGTTACCTTAGGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 470 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 469 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAACATC 417 >seq839 Length=95879 Score = 670 bits (742), Expect = 0.0 Identities = 473/534 (89%), Gaps = 9/534 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 3497 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3556 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||| ||| ||||||||||||||| | |||||| || |||||||| Sbjct 3557 TTTTAACAGATGTGCCGCTCCAACCAAACTCCCCACCTTATAATGTCTTCCGCCCGGATC 3616 Query 127 GGCCCG-CGAAGGAC-CTTAACGCCAGAAAAT--GGTCGGTGAAGACCAGTTCCGCTTCA 182 ||||| ||||| | ||| | || |||| || | ||| || |||| |||| Sbjct 3617 AGCCCGTCGAAGCAGGCTTTGGGTCAAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 3674 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAACGGCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||| |||| ||||||| Sbjct 3675 CAGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCTCGAA--GGCTCCC 3732 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3733 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGG 3792 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| Sbjct 3793 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGT 3852 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3853 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACAAG 3912 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3913 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 3972 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 3973 TTTCTTCACTTTGACATTTAGAGCACTGGGCAGAAATCACATTGCGTTAACATC 4026 >seq2173 Length=56971 Score = 329 bits (364), Expect = 1e-87 Identities = 197/206 (96%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 228 CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 10907 CCGAA--GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 10964 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| Sbjct 10965 CAAGCTCAACAAGGTCTTCTTTCCCCACTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGG 11024 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 11025 TTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 11084 Query 408 AATTAGATGACGAGGCATTTGGCTAC 433 |||||||||||||||||||||||||| Sbjct 11085 AATTAGATGACGAGGCATTTGGCTAC 11110 >seq17038 Length=7242 Score = 259 bits (286), Expect = 2e-66 Identities = 153/158 (97%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 3260 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGACGCATTTGGCTACCTTA 3201 Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497 |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 3200 AGAGAGTCATAGTTACTCCCACCGTTTACCC-CGCTTGGTTGAATTTCTTCACTTTGACA 3142 Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||| ||||||||||||||||||| |||||| Sbjct 3141 TTCAGAGCACTAGGCAGAAATCACATTGCGTTAACATC 3104 >seq6355 Length=24676 Score = 165 bits (182), Expect = 3e-38 Identities = 114/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| || Sbjct 18665 ATTTTACAAAGTCGGACTAGAGTCAAGCTCAATAGGGTTTTCTTTTCCCGCTGATTCTGC 18724 Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 |||||| |||||||| ||||||||| || ||||||||| || |||| ||||||||||| Sbjct 18725 CAAGCCAATTCCCTTGACTGTGGTTTGGCGGGATAGTAGACAGTGACAATGGGAATCTCG 18784 Query 385 TTAATCCAT 393 |||||| || Sbjct 18785 TTAATCAAT 18793 >seq5395 Length=28830 Score = 156 bits (172), Expect = 1e-35 Identities = 112/129 (87%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324 |||| ||||||||||| ||||||||||||||| ||||| |||||| ||||||||||| || Sbjct 21892 ATTTTACAAAGTCGGATTAGAGTCAAGCTCAATAGGGTTTTCTTTTCCCGCTGATTCTGC 21951 Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384 |||||| ||||||| ||||||||| || ||||||||| || |||| ||||||||||| Sbjct 21952 CAAGCCAATTCCCTTTACTGTGGTTTGGCGGGATAGTAGACAGTGACAATGGGAATCTCG 22011 Query 385 TTAATCCAT 393 |||||| || Sbjct 22012 TTAATCAAT 22020 >seq39277 Length=1756 Score = 149 bits (164), Expect = 2e-33 Identities = 104/117 (89%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| |||| || ||||||||| |||| ||| ||||||||||||||||| |||| || Sbjct 1481 TCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAA 1422 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1421 -GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 1366 >seq7896 Length=19876 Score = 102 bits (112), Expect = 3e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 56 CCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCAT 115 |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 7063 CCTGCGTTATCTTTTAACAGATGTGCCGCCCCAACCAAACTCCCCACCTGACAATGTCTT 7122 Query 116 CAACCCGGATC 126 | |||||||| Sbjct 7123 CTGCCCGGATC 7133 >seq7106 Length=22236 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/87 (82%), Gaps = 5/87 (6%) Strand=Plus/Minus Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT----CATAGTTACT 454 || |||||||||||||||| ||| || ||| ||| |||||||| | |||||| ||| Sbjct 8826 CGTGTCACTAATTAGATGATGAGACAGTTGACTA-TTTAAGAGACTCATGCATAGTCACT 8768 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAA 481 ||| || ||||||||| |||||||||| Sbjct 8767 CCCACCCTTTACCCGCACTTGGTTGAA 8741 >seq11702 Length=12689 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 444 || ||| ||| ||||||||||||||||||| ||||| ||||| || || |||||||||| Sbjct 8944 TTGATCAATTTGTGCGCGTCACTAATTAGATAACGAGACATTTAGCAACTTTAAGAGAGT 8885 Query 445 CATA 448 |||| Sbjct 8884 CATA 8881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1630165677056