Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq36124 697 0.0
seq839 670 0.0
seq2173 329 1e-87
seq17038 259 2e-66
seq6355 165 3e-38
seq5395 156 1e-35
seq39277 149 2e-33
seq7896 102 3e-19
seq7106 80.6 9e-13
seq11702 75.2 4e-11
>seq36124
Length=1942
Score = 697 bits (772), Expect = 0.0
Identities = 479/533 (90%), Gaps = 7/533 (1%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 946 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 887
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 886 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAGCCCGGATC 827
Query 127 GGCCCGC-GAAGGAC-CTTAACG-CCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182
|||||| |||| | ||| | ||| ||| | || | ||| || |||| ||||
Sbjct 826 AGCCCGCCGAAGCAGGCTTTGGGTCCAAAAAGAGGGACAGTGCC--CCGCCTCCGATTCA 769
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242
|| ||||||||| |||| ||| ||||||||||||||||| |||| || ||||||||
Sbjct 768 CGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAA-GGCTCCCA 710
Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 650
Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 649 CTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTA 590
Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 530
Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CATTTGGTTACCTTAGGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 470
Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 469 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAACATC 417
>seq839
Length=95879
Score = 670 bits (742), Expect = 0.0
Identities = 473/534 (89%), Gaps = 9/534 (2%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
|||||| || ||| ||||||||||||||| |||| | |||||||||||||||||||
Sbjct 3497 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 3556
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
||||||||||||||||| ||| ||||||||||||||| | |||||| || ||||||||
Sbjct 3557 TTTTAACAGATGTGCCGCTCCAACCAAACTCCCCACCTTATAATGTCTTCCGCCCGGATC 3616
Query 127 GGCCCG-CGAAGGAC-CTTAACGCCAGAAAAT--GGTCGGTGAAGACCAGTTCCGCTTCA 182
||||| ||||| | ||| | || |||| || | ||| || |||| ||||
Sbjct 3617 AGCCCGTCGAAGCAGGCTTTGGGTCAAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTCA 3674
Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC-CGAAACGGCTCCC 241
|| ||||||||| |||| ||| ||||||||||||||||| ||| |||| |||||||
Sbjct 3675 CAGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCTCGAA--GGCTCCC 3732
Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3733 ACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAAGG 3792
Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 3793 TCTTCTTTCCCCGCTGATTCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGT 3852
Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3853 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACAAG 3912
Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3913 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 3972
Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 3973 TTTCTTCACTTTGACATTTAGAGCACTGGGCAGAAATCACATTGCGTTAACATC 4026
>seq2173
Length=56971
Score = 329 bits (364), Expect = 1e-87
Identities = 197/206 (96%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 228 CCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 10907 CCGAA--GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 10964
Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347
||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||||||
Sbjct 10965 CAAGCTCAACAAGGTCTTCTTTCCCCACTGATTCTGCCAAGCCCGTTCTCTTGGCTGTGG 11024
Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 11025 TTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 11084
Query 408 AATTAGATGACGAGGCATTTGGCTAC 433
||||||||||||||||||||||||||
Sbjct 11085 AATTAGATGACGAGGCATTTGGCTAC 11110
>seq17038
Length=7242
Score = 259 bits (286), Expect = 2e-66
Identities = 153/158 (97%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 378 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3260 AATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGACGCATTTGGCTACCTTA 3201
Query 438 AGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACA 497
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 3200 AGAGAGTCATAGTTACTCCCACCGTTTACCC-CGCTTGGTTGAATTTCTTCACTTTGACA 3142
Query 498 TTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535
||||||||||| ||||||||||||||||||| ||||||
Sbjct 3141 TTCAGAGCACTAGGCAGAAATCACATTGCGTTAACATC 3104
>seq6355
Length=24676
Score = 165 bits (182), Expect = 3e-38
Identities = 114/129 (88%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324
|||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| ||
Sbjct 18665 ATTTTACAAAGTCGGACTAGAGTCAAGCTCAATAGGGTTTTCTTTTCCCGCTGATTCTGC 18724
Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384
|||||| |||||||| ||||||||| || ||||||||| || |||| |||||||||||
Sbjct 18725 CAAGCCAATTCCCTTGACTGTGGTTTGGCGGGATAGTAGACAGTGACAATGGGAATCTCG 18784
Query 385 TTAATCCAT 393
|||||| ||
Sbjct 18785 TTAATCAAT 18793
>seq5395
Length=28830
Score = 156 bits (172), Expect = 1e-35
Identities = 112/129 (87%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 265 ATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGC 324
|||| ||||||||||| ||||||||||||||| ||||| |||||| ||||||||||| ||
Sbjct 21892 ATTTTACAAAGTCGGATTAGAGTCAAGCTCAATAGGGTTTTCTTTTCCCGCTGATTCTGC 21951
Query 325 CAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCG 384
|||||| ||||||| ||||||||| || ||||||||| || |||| |||||||||||
Sbjct 21952 CAAGCCAATTCCCTTTACTGTGGTTTGGCGGGATAGTAGACAGTGACAATGGGAATCTCG 22011
Query 385 TTAATCCAT 393
|||||| ||
Sbjct 22012 TTAATCAAT 22020
>seq39277
Length=1756
Score = 149 bits (164), Expect = 2e-33
Identities = 104/117 (89%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233
|||| |||| || ||||||||| |||| ||| ||||||||||||||||| |||| ||
Sbjct 1481 TCCGATTCACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCCCGAA 1422
Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 -GGCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 1366
>seq7896
Length=19876
Score = 102 bits (112), Expect = 3e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 56 CCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCAT 115
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 7063 CCTGCGTTATCTTTTAACAGATGTGCCGCCCCAACCAAACTCCCCACCTGACAATGTCTT 7122
Query 116 CAACCCGGATC 126
| ||||||||
Sbjct 7123 CTGCCCGGATC 7133
>seq7106
Length=22236
Score = 80.6 bits (88), Expect = 9e-13
Identities = 71/87 (82%), Gaps = 5/87 (6%)
Strand=Plus/Minus
Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT----CATAGTTACT 454
|| |||||||||||||||| ||| || ||| ||| |||||||| | |||||| |||
Sbjct 8826 CGTGTCACTAATTAGATGATGAGACAGTTGACTA-TTTAAGAGACTCATGCATAGTCACT 8768
Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAA 481
||| || ||||||||| ||||||||||
Sbjct 8767 CCCACCCTTTACCCGCACTTGGTTGAA 8741
>seq11702
Length=12689
Score = 75.2 bits (82), Expect = 4e-11
Identities = 55/64 (86%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 385 TTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGT 444
|| ||| ||| ||||||||||||||||||| ||||| ||||| || || ||||||||||
Sbjct 8944 TTGATCAATTTGTGCGCGTCACTAATTAGATAACGAGACATTTAGCAACTTTAAGAGAGT 8885
Query 445 CATA 448
||||
Sbjct 8884 CATA 8881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1630165677056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |