Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2006 143 9e-32 seq10350 140 1e-30 seq22152 138 4e-30 seq750 134 5e-29 seq28409 131 6e-28 seq1861 120 1e-24 seq39767 109 2e-21 seq11084 82.4 3e-13 seq9815 77.0 1e-11 >seq2006 Length=59971 Score = 143 bits (158), Expect = 9e-32 Identities = 379/569 (67%), Gaps = 21/569 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| ||||||||||||| || ||| || ||||| | || || Sbjct 45901 TCGACGGGTGGGTCTTGCAGTCAAGCTCCTTTCTGCCTTTGCACTCGAGGGCCAATCTCC 45842 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | |||||| |||||||| ||||||| || | ||||| |||| | || ||||| Sbjct 45841 GTCTGGCCTGAGGAAACCTTTGCACGCCTCCATTTCCTTTTGAGAGGCCTACA-CCCCAT 45783 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||| || || || || |||||||||| || Sbjct 45782 AGAAACTGTCTACCTAAGAATGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 45723 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 45722 TAGCTTTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GCGGCCT--T 45666 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | | ||||||| ||| || || || | || |||||| ||| | |||||| Sbjct 45665 CTTCGCTTTCCACCTAAGCTATGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAATAGTG 45608 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 45607 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 45548 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGA 411 ||||||| |||| | ||||| || | ||||||| || ||||||| ||||||| Sbjct 45547 TTTCACCAAGCCTCTCTCTGAGATAGTGCCCAAATCGTTACTCCTTTCGTGCGGGTCGGA 45488 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||| ||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 45487 ACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACC 45428 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531 |||||||| | ||| ||| || || | | |||| | ||| |||||| Sbjct 45427 GGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTC 45374 Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| || |||||||||| || |||| Sbjct 45373 CGGCACTGGACAGGCGTCAGCCCCCATAC 45345 >seq10350 Length=14826 Score = 140 bits (154), Expect = 1e-30 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | |||||||||| ||||| | Sbjct 4361 CTCCCACCTATCCTACACATTCGATCAAGGCTGTCACTGTGAAGCTATAGTTAAGGTGCA 4302 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||| | || | | | |||||||| | | ||||||||| | Sbjct 4301 CGGGGTCTTATCGGCTATCCATAGGTACTCCGTGTCTTTACTAAGAATTCAATTTCACTG 4242 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||| | | ||| ||||||||| |||||||||||||||| ||||| | Sbjct 4241 GGTCCATGTCGGAGATAACGGGGTAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 4182 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||||| |||||||||||| |||| | |||| ||||| |||| |||||||| Sbjct 4181 GACAAGGAATTTTGCTACCTTAGGACAGTTAGAATTACTGCCGCCTTTTATCGGGGCTTC 4122 Query 480 AATT 483 ||| Sbjct 4121 CATT 4118 >seq22152 Length=4504 Score = 138 bits (152), Expect = 4e-30 Identities = 121/150 (81%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 334 TCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACG 393 |||||||| | | ||||||||| || | ||| | |||||||| || ||||||||| Sbjct 630 TCTTTACTGAGAATTCAATTTCACTGGCCATGTCG--GAGACAGCGAGGCAGTCGTTACA 573 Query 394 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAG 453 | |||||||||||||| ||||| ||| |||||||||||||||||||||| |||| || Sbjct 572 CTATTCGTGCAGGTCGCTACTTATGCGATAAGGAATTTCGCTACCTTAGGACAGTTAGAG 513 Query 454 TTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||| |||||||||| |||||||| ||| Sbjct 512 TTACTGCCGCCGTTTATCGGGGCTTCCATT 483 >seq750 Length=101112 Score = 134 bits (148), Expect = 5e-29 Identities = 321/477 (67%), Gaps = 15/477 (3%) Strand=Plus/Minus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || | | | | || Sbjct 68921 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCTGTCTGGCCCGA 68862 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || ||||||| |||||| |||| |||||||||| | || |||||| ||||| | Sbjct 68861 GGAAACCTTTACACGCCTCAATTACCTTTTGGGAGGCCTAC-GCCCCATAGAAACTGTCT 68803 Query 132 ACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCA 188 ||| | | |||||| || || || || |||||||||| | | | || Sbjct 68802 ACCTGAGAATGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTTTAGCTCTTCCA 68743 Query 189 GAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCATCATAGTCTCCC 245 ||||||||| ||| | | ||| | | ||| || | |||| || | || || Sbjct 68742 GAGTGGTATATCACTGATGGCTCGGGCCCCCCCAGAAGGG-GGCCT--TCTTCTCCTTCC 68686 Query 246 ACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-G 302 ||||| || | || || || | || |||||| ||||| | ||||||| | | | Sbjct 68685 ACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAAGGAACAGTGAAGCTTCATAG 68628 Query 303 GGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGC 362 ||||||| |||| || | | ||||||| || | | |||||||| || Sbjct 68627 GGTCTTTCTGTCCAAGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCAAGC 68568 Query 363 CTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGAC 422 | | ||||||| | |||||||||| ||||||| |||||||||||||||||| Sbjct 68567 TTCTCTCCGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCGAC 68508 Query 423 AAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||||||||||||||| |||||||||| |||| | | |||||| |||| Sbjct 68507 AAGGAATTTCGCTACCTTAGGACCGTTATAGTTAGGGCCGCTGCTCACTGGGTCTTC 68451 >seq28409 Length=2808 Score = 131 bits (144), Expect = 6e-28 Identities = 108/129 (84%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||| | |||| | |||||||| | || |||||||| | ||||||||||||| Sbjct 2366 ATTTCACTGAGCCTCTCTCTGAGACAGT-GCCCAGATCGTTACGTCTTTCGTGCAGGTCG 2424 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||||||||||||||||||||||| ||||||||| |||||||| || ||||||||| | Sbjct 2425 GAACTTACCCGACAAGGAATTTCGCGACCTTAGGACCGTTATAGTGACGACCGCCGTTCA 2484 Query 470 CTGGGGCTT 478 | ||||||| Sbjct 2485 CCGGGGCTT 2493 >seq1861 Length=62895 Score = 120 bits (132), Expect = 1e-24 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 27252 TCGTTAGGCCTTTCATGCGAGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 27311 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| || |||||||| Sbjct 27312 TGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC 27345 Score = 75.2 bits (82), Expect = 4e-11 Identities = 105/146 (72%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 26866 TCGACTGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 26925 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| ||||||| |||| |||||||||| | | ||||||| Sbjct 26926 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCATTACCTTTTGGGAGGCCTA-CGCCCCAT 26984 Query 121 TTAAACTACCCACCAGGCACTGTCCC 146 ||||| | ||| | | |||||| Sbjct 26985 AGAAACTGTCTACCTGAGAATGTCCC 27010 >seq39767 Length=1735 Score = 109 bits (120), Expect = 2e-21 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 350 AATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCG 409 |||||||| || | ||| | |||| ||| || ||||||||| | ||| |||||||| | Sbjct 1026 AATTTCACTGGCCATGTTG--GAGATAGCGAGGCAGTCGTTACACTATTTGTGCAGGTTG 969 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||||| | | |||||||||||||||||||||| |||| |||||| |||||||||| Sbjct 968 CTACTTATGCCATAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTA 909 Query 470 CTGGGGCTTCAATT 483 ||||| || ||| Sbjct 908 TCGGGGCATCCATT 895 >seq11084 Length=13597 Score = 82.4 bits (90), Expect = 3e-13 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| | | ||||||| ||| |||||| ||| | ||||| |||||||||||| Sbjct 10202 GAGACAGCGGTGATCTCGTTACACCACTCGTGCCGGTTGCTACTTATGCGACAAGGAATT 10143 Query 431 TCGCTACCTTAGGATGGTT-ATAGTTACCACCGCCGTTTACTGGGGC 476 ||||| |||||||| ||| | |||| | || |||||||| || || Sbjct 10142 TCGCTTCCTTAGGACAGTTAAGAGTTTCTGCCACCGTTTACCGGCGC 10096 >seq9815 Length=15717 Score = 77.0 bits (84), Expect = 1e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| || ||| ||| ||||||||| |||||||||||| ||||||||| ||| Sbjct 2616 TCGTTACGCCTTTTGTGTGAGTCAGAACTTACCTGACAAGGAATTTTGCTACCTTAAGAT 2675 Query 446 GGTTATA 452 |||||| Sbjct 2676 CGTTATA 2682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1697158787072