Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq4906 132 1e-28
seq3447 96.9 7e-18
>seq4906
Length=31215
Score = 132 bits (146), Expect = 1e-28
Identities = 196/279 (70%), Gaps = 18/279 (6%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| || ||| || |
Sbjct 1784 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCATCAT-----------T 1832
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
| || ||| | |||||||||| || | |||||| ||||| ||| |||||
Sbjct 1833 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 1885
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| ||||||| || ||||| ||||||||||||||||||
Sbjct 1886 GGCATTGCTCCGTCAGGCTTTCGCCCATTGAGGAAAATTCCCCACTGCTGCCTCCCGTAG 1945
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||| ||||| ||| ||||| || | ||||||| || | ||| ||
Sbjct 1946 GAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2005
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
| | | || ||| || || |||| || |||| |||||
Sbjct 2006 CATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAAT 2044
>seq3447
Length=41424
Score = 96.9 bits (106), Expect = 7e-18
Identities = 154/222 (69%), Gaps = 18/222 (8%)
Strand=Plus/Plus
Query 7 TGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGAAGG 66
||||||||||||||||||||||||||| || |||| || ||
Sbjct 10940 TGGCACGGAGTTAGCCGATGCTTATTCCCCAGATACAATCAT-----------TGC---- 10984
Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126
|| ||| | | |||||||| | |||| |||||| || || ||| ||||| | |
Sbjct 10985 --TTCTTCTCCTGGAAAAGAAGATCACAACCCGTAGG-CCATCTACCTCCACGCGGCATT 11041
Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186
|| |||| || ||| ||||| || | ||| |||||||||||||| ||||||| |
Sbjct 11042 ACTCCGTCAGGCTTTCGCACATTGTGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCT 11101
Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|| |||||||| ||||||| ||||| || | |||| || ||
Sbjct 11102 GGGCCGTGTCTTAGTTCCAGTGTGGCTGATCATCCTATCGGA 11143
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1065509464064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |