Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq4906 132 1e-28 seq3447 96.9 7e-18 >seq4906 Length=31215 Score = 132 bits (146), Expect = 1e-28 Identities = 196/279 (70%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| || ||| || | Sbjct 1784 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATACCATCAT-----------T 1832 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| | |||||||||| || | |||||| ||||| ||| ||||| Sbjct 1833 GC------TTCTTCTCCGGGAAAAGAAGTTCACGACCCGTAGG-CCTTCTACCTCCACGC 1885 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| ||||||| || ||||| |||||||||||||||||| Sbjct 1886 GGCATTGCTCCGTCAGGCTTTCGCCCATTGAGGAAAATTCCCCACTGCTGCCTCCCGTAG 1945 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||| ||||| ||| ||||| || | ||||||| || | ||| || Sbjct 1946 GAGTCTGGGCCGTGTATCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2005 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | | || ||| || || |||| || |||| ||||| Sbjct 2006 CATCGCCTTGGTAAGCTATTGCCCCACCAACTAGCTAAT 2044 >seq3447 Length=41424 Score = 96.9 bits (106), Expect = 7e-18 Identities = 154/222 (69%), Gaps = 18/222 (8%) Strand=Plus/Plus Query 7 TGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGAAGG 66 ||||||||||||||||||||||||||| || |||| || || Sbjct 10940 TGGCACGGAGTTAGCCGATGCTTATTCCCCAGATACAATCAT-----------TGC---- 10984 Query 67 TTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTG 126 || ||| | | |||||||| | |||| |||||| || || ||| ||||| | | Sbjct 10985 --TTCTTCTCCTGGAAAAGAAGATCACAACCCGTAGG-CCATCTACCTCCACGCGGCATT 11041 Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 || |||| || ||| ||||| || | ||| |||||||||||||| ||||||| | Sbjct 11042 ACTCCGTCAGGCTTTCGCACATTGTGGAAAAGTCCCCACTGCTGCCTCCCATAGGAGTCT 11101 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || |||||||| ||||||| ||||| || | |||| || || Sbjct 11102 GGGCCGTGTCTTAGTTCCAGTGTGGCTGATCATCCTATCGGA 11143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065509464064