Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1223 96.9 6e-18 seq19828 93.3 7e-17 seq275837 89.7 8e-16 seq36124 89.7 8e-16 seq26979 82.4 1e-13 >seq1223 Length=79956 Score = 96.9 bits (106), Expect = 6e-18 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 2 TACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTG 61 |||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||| Sbjct 55655 TACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTG 55712 Query 62 CCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAG 121 | ||||| |||||| ||||||||||| ||||| |||||||||||||||||| || || Sbjct 55713 GCACGAAGGTACCATGCGCTGGATTATGACTGAAAGCCTCTAAGTCAGAATCCGGGCTAG 55772 Query 122 AA 123 || Sbjct 55773 AA 55774 >seq19828 Length=5530 Score = 93.3 bits (102), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | | |||| || | ||| || ||| || |||| Sbjct 339 GTACGAGAGGAACCATTGA-TTC-GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 396 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| ||||| |||||||||||||||||| || | Sbjct 397 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAATGCCTCTAAGTCAGAATCCGGGCTA 456 Query 121 GAA 123 ||| Sbjct 457 GAA 459 >seq275837 Length=211 Score = 89.7 bits (98), Expect = 8e-16 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| | | ||||||| | ||| || ||| || || | Sbjct 130 GTACGAGAGGAACTGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAAT 73 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | |||||||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 72 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAA 22 >seq36124 Length=1942 Score = 89.7 bits (98), Expect = 8e-16 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | || ||| | | ||||||| | ||| || ||| || || | Sbjct 1269 GTACGAGAGGAACTGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAAT 1326 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAA 111 | |||||||||||| | ||||||||||| ||||||||||||||||||||| Sbjct 1327 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAA 1377 >seq26979 Length=3085 Score = 82.4 bits (90), Expect = 1e-13 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| | ||| || ||| | ||||| || ||||||||| | ||||||||||| Sbjct 362 AATTGGTCATCGCGCTTGGTTGAAAAATCAGTGGCGTGAAGCTACCGTGTGCTGGATTAT 303 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 | ||||| |||||||||||||||||| || |||| Sbjct 302 GACTGAATGCCTCTAAGTCAGAATCCGGGCTAGAA 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816756727808