Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq839 556 4e-156 seq554 489 5e-136 seq145063 239 1e-60 seq3815 215 2e-53 seq9478 212 2e-52 seq1237 168 2e-39 seq13770 141 3e-31 seq107214 111 5e-22 seq227 107 6e-21 seq171 80.6 8e-13 >seq839 Length=95879 Score = 556 bits (616), Expect = 4e-156 Identities = 434/511 (85%), Gaps = 9/511 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | |||||| |||| |||||||||||||||||| Sbjct 10463 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 10521 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 10522 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGTTGTT 10581 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 10582 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 10641 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||| || ||| |||||||||| | ||||| || Sbjct 10642 GGCCACTATCCTACCATCGAAAGTTGATAAGGTAGATATTTGAATGATGCGTCGCCAGCA 10701 Query 241 CA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 || |||| |||||| ||| |||||| |||||||| ||| | | || ||| Sbjct 10702 CAGAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGGCAGAGCCCGCG 10761 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||||||| || ||||||| |||||| || ||| | ||| ||||||| Sbjct 10762 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGATTTGTTGCACGTATTAG 10821 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||||| Sbjct 10822 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 10880 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 |||||||||||| ||||||||| || | ||| | | ||||||| |||||||||||||| Sbjct 10881 TAATGAGCCATTTGCAGTTTCATAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 10940 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| || Sbjct 10941 ATCTTTGAGACAAGCATATGACTACTGGTAG 10971 >seq554 Length=114263 Score = 489 bits (542), Expect = 5e-136 Identities = 417/510 (82%), Gaps = 22/510 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || || | |||||| |||| |||||||||||||||||| Sbjct 77151 GTACTCATTCCAATTACCATACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 77209 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| |||| Sbjct 77210 CCCCGTGTCAGGATTGGGTAATTTACGCGTCTGCTGCCTTCCTTGGATGTGATAGTCGTT 77269 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||| |||||||||||||||||| |||| ||||| ||||||||| Sbjct 77270 TCTCAGGCTCCCTCTCTGGAATCGAACCCTAATTCTCCGTCACCCGACACCACCATGGTA 77329 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||| |||||||||||||||||||||||||||||| ||||||||| | ||||| || Sbjct 77330 GGCCATTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGTTGCGTCGCCAGCA 77389 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 | ||||| ||| || || |||||| |||||||| ||| | | || || Sbjct 77390 CAAAGGCTGTGCTATCTGTCGAGTTATCATGAATCATCAATACAACGGGCAGAGCCCGCA 77449 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| |||||||||||||| || ||||||| ||||||||| ||||| Sbjct 77450 TTGACCGTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG-------------ATTAG 77496 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||| ||||| || ||| |||||| |||| |||||||||| Sbjct 77497 CTCTAGAATTACTACGGTTATCTGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 77555 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473 ||||||| ||||||||||||||| |||| ||| | | ||||||| ||||||||| |||| Sbjct 77556 TAATGAGTCATTCGCAGTTTCACAGTATGAATTAGTTCATACTTACACATGCATGACTTA 77615 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||||||||||||||| Sbjct 77616 GTCTTTGAGACAAGCATATGACTACTGGCA 77645 >seq145063 Length=331 Score = 239 bits (264), Expect = 1e-60 Identities = 163/182 (90%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| || | ||||| |||| |||||||||||||||||| Sbjct 99 GTACTCATTCCAATTACCAGACTCATA-GAGCCTGGTATTGTTATTTATTGTCACTACCT 157 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 158 CCTCGTGTCAGGATTGGGTAATTTGCGCGCATGCTGCCTTCCTTGGATGTGGTAGCCGTT 217 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||| Sbjct 218 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACTCGTCACCACCATGGTA 277 Query 181 GG 182 || Sbjct 278 GG 279 >seq3815 Length=38263 Score = 215 bits (238), Expect = 2e-53 Identities = 173/204 (85%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || | ||| ||||||||| ||| | ||| |||||| |||||| Sbjct 1876 TTTTATCTAATAAATGCATCGATTCTAGAAGTCGGGATTTGTTGCACGTATTAACTCTAG 1817 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| || |||||||| |||||| | |||||||||| ||| |||||||| ||||||| Sbjct 1816 AATTACTACAGTTATCCAAGTAGTA-GATACTATCAAACAAATTATAACTGACTTAATGA 1758 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 | |||||||| ||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 1757 GTCATTCGCAATTTCA--GTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 1700 Query 480 GAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||| Sbjct 1699 GAGACAAGCATATGACTACTGGCA 1676 >seq9478 Length=16373 Score = 212 bits (234), Expect = 2e-52 Identities = 170/200 (85%), Gaps = 5/200 (3%) Strand=Plus/Minus Query 306 ATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||||| || | |||| ||||| ||| ||| | ||| |||||| |||||||||| Sbjct 5470 ATCTAATAAATGCATCGCTTCTAGAAGTTGGGATTTGTTGCACGTATTAACTCTAGAATT 5411 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 || || |||||||| |||||| | |||||||||| |||| |||||||| |||||||| || Sbjct 5410 ACTACAGTTATCCAAGTAGTA-GATACTATCAAACAAACTATAACTGACTTAATGAGTCA 5352 Query 425 TTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||| ||||| || | ||| || ||||||| |||||||||||||||||||||||| Sbjct 5351 TTCGCAATTTCA--GTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGA 5294 Query 484 CAAGCATATGACTACTGGCA 503 |||||||||||||||||||| Sbjct 5293 CAAGCATATGACTACTGGCA 5274 >seq1237 Length=79597 Score = 168 bits (186), Expect = 2e-39 Identities = 129/150 (86%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415 ||||||||||| ||||||||| |||||| | ||| |||||| |||| ||||||||||| Sbjct 59506 TCTAGAATTACTACGGTTATCTGAGTAGTA-GATACCATCAAACAAACTATAACTGATTT 59564 Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAA 474 || |||||||| |||||||||| || | ||| || ||||||| |||||||| ||||| Sbjct 59565 AACGAGCCATTTGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATAACTTAA 59624 Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| Sbjct 59625 TCTTTGAGACAAGCATATGACTACTGGCAG 59654 >seq13770 Length=10093 Score = 141 bits (156), Expect = 3e-31 Identities = 150/204 (74%), Gaps = 33/204 (16%) Strand=Plus/Minus Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359 |||||||||||||||| || |||| ||||||||| ||| | ||| |||||| ||||| Sbjct 3438 TTTTTATCTAATAAATGCATTACTTCTAGAAGTCGGGATTTGTTGCACGTATTAACTCTA 3379 Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419 |||||| || |||||||| ||||| || |||||||||| |||| |||||||| ||| Sbjct 3378 GAATTATTACAGTTATCCAAGTAGT-AGATACTATCAAACAAACTATAACTGACTTA--- 3323 Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479 | | ||||||| |||||||||||||||||||| Sbjct 3322 ----------------------------GTTCATACTTACACATGCATGGCTTAATCTTT 3291 Query 480 GAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||| Sbjct 3290 GAGACAAGCATATGACTACTGGCA 3267 >seq107214 Length=459 Score = 111 bits (122), Expect = 5e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208 ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 414 CTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 355 Query 209 AGGGCAGAAATTTGAATGA 227 |||||||| |||||||||| Sbjct 354 AGGGCAGATATTTGAATGA 336 >seq227 Length=156916 Score = 107 bits (118), Expect = 6e-21 Identities = 112/145 (77%), Gaps = 13/145 (9%) Strand=Plus/Plus Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGG--G 293 ||||| |||||| ||| |||||| |||||||| ||| ||| | ||| | Sbjct 139944 AAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGA----CAAAGCCCG 139999 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||||| ||||||||||||||| || ||||||| ||||||||| ||| | ||| ||||| Sbjct 140000 CGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATT 140059 Query 353 AGCTCTAGAATTACCACGGTTATCC 377 |||||||||||||| || ||||||| Sbjct 140060 AGCTCTAGAATTACTACAGTTATCC 140084 >seq171 Length=169594 Score = 80.6 bits (88), Expect = 8e-13 Identities = 113/155 (73%), Gaps = 8/155 (5%) Strand=Plus/Plus Query 92 TGCTGCCTTCCTTGGATGTGGTA--GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||||| ||| ||||||||| ||||||||||| | | |||||| || |||| Sbjct 134503 TGCTGCCTTTCTTAGATGTGGTATAGCCGTTTCTCATGTTACCTCTCTAAAA----ACCC 134558 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTA-GGCCACTATCCTACCATCGAAAGTTGAT 208 |||| | | | |||| | ||||| || || || |||||||| | | |||||||| Sbjct 134559 TAAT-CTCTATCACCCATCACCACCATTCTAAGGTCATTATCCTACTGTAGGAAGTTGAT 134617 Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 ||| || | |||||||||| || || |||||| Sbjct 134618 AGGACAAATATTTGAATGATGAGTCACCAGCTCAA 134652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505749901312