Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13]
307,872 sequences; 711,719,955 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq839 556 4e-156
seq554 489 5e-136
seq145063 239 1e-60
seq3815 215 2e-53
seq9478 212 2e-52
seq1237 168 2e-39
seq13770 141 3e-31
seq107214 111 5e-22
seq227 107 6e-21
seq171 80.6 8e-13
>seq839
Length=95879
Score = 556 bits (616), Expect = 4e-156
Identities = 434/511 (85%), Gaps = 9/511 (2%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | |||||| |||| ||||||||||||||||||
Sbjct 10463 GTACTCATTCCAATTACCAGACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 10521
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 10522 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGTTGTT 10581
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 10582 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 10641
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||||||||||||||||||||||||||| || ||| |||||||||| | ||||| ||
Sbjct 10642 GGCCACTATCCTACCATCGAAAGTTGATAAGGTAGATATTTGAATGATGCGTCGCCAGCA 10701
Query 241 CA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295
|| |||| |||||| ||| |||||| |||||||| ||| | | || |||
Sbjct 10702 CAGAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGGCAGAGCCCGCG 10761
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
||| ||||||||||||||| || ||||||| |||||| || ||| | ||| |||||||
Sbjct 10762 TTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCAGGATTTGTTGCACGTATTAG 10821
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| |||||||||| ||||| || ||| |||||| |||| ||||||||||
Sbjct 10822 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 10880
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
|||||||||||| ||||||||| || | ||| | | ||||||| ||||||||||||||
Sbjct 10881 TAATGAGCCATTTGCAGTTTCATAGTCTGAATTAGTTCATACTTACACATGCATGGCTTA 10940
Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||| ||
Sbjct 10941 ATCTTTGAGACAAGCATATGACTACTGGTAG 10971
>seq554
Length=114263
Score = 489 bits (542), Expect = 5e-136
Identities = 417/510 (82%), Gaps = 22/510 (4%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| | || || | |||||| |||| ||||||||||||||||||
Sbjct 77151 GTACTCATTCCAATTACCATACTCATA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 77209
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||||||||| |||||||||||||| |||| ||||||||||||||||||||| ||| ||||
Sbjct 77210 CCCCGTGTCAGGATTGGGTAATTTACGCGTCTGCTGCCTTCCTTGGATGTGATAGTCGTT 77269
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
|||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||
Sbjct 77270 TCTCAGGCTCCCTCTCTGGAATCGAACCCTAATTCTCCGTCACCCGACACCACCATGGTA 77329
Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240
||||| |||||||||||||||||||||||||||||| ||||||||| | ||||| ||
Sbjct 77330 GGCCATTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGTTGCGTCGCCAGCA 77389
Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295
| ||||| ||| || || |||||| |||||||| ||| | | || ||
Sbjct 77390 CAAAGGCTGTGCTATCTGTCGAGTTATCATGAATCATCAATACAACGGGCAGAGCCCGCA 77449
Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354
||| |||||||||||||| || ||||||| ||||||||| |||||
Sbjct 77450 TTGACCGTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGG-------------ATTAG 77496
Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414
|||||||||||| ||||||||| ||||| || ||| |||||| |||| ||||||||||
Sbjct 77497 CTCTAGAATTACTACGGTTATCTGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 77555
Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTA 473
||||||| ||||||||||||||| |||| ||| | | ||||||| ||||||||| ||||
Sbjct 77556 TAATGAGTCATTCGCAGTTTCACAGTATGAATTAGTTCATACTTACACATGCATGACTTA 77615
Query 474 ATCTTTGAGACAAGCATATGACTACTGGCA 503
|||||||||||||||||||||||||||||
Sbjct 77616 GTCTTTGAGACAAGCATATGACTACTGGCA 77645
>seq145063
Length=331
Score = 239 bits (264), Expect = 1e-60
Identities = 163/182 (90%), Gaps = 1/182 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||||||||| |||| || | ||||| |||| ||||||||||||||||||
Sbjct 99 GTACTCATTCCAATTACCAGACTCATA-GAGCCTGGTATTGTTATTTATTGTCACTACCT 157
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
|| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 158 CCTCGTGTCAGGATTGGGTAATTTGCGCGCATGCTGCCTTCCTTGGATGTGGTAGCCGTT 217
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||
Sbjct 218 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACTCGTCACCACCATGGTA 277
Query 181 GG 182
||
Sbjct 278 GG 279
>seq3815
Length=38263
Score = 215 bits (238), Expect = 2e-53
Identities = 173/204 (85%), Gaps = 5/204 (2%)
Strand=Plus/Minus
Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360
||||||||||||||| || | ||| ||||||||| ||| | ||| |||||| ||||||
Sbjct 1876 TTTTATCTAATAAATGCATCGATTCTAGAAGTCGGGATTTGTTGCACGTATTAACTCTAG 1817
Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420
|||||| || |||||||| |||||| | |||||||||| ||| |||||||| |||||||
Sbjct 1816 AATTACTACAGTTATCCAAGTAGTA-GATACTATCAAACAAATTATAACTGACTTAATGA 1758
Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479
| |||||||| ||||| || | ||| || ||||||| ||||||||||||||||||||
Sbjct 1757 GTCATTCGCAATTTCA--GTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 1700
Query 480 GAGACAAGCATATGACTACTGGCA 503
||||||||||||||||||||||||
Sbjct 1699 GAGACAAGCATATGACTACTGGCA 1676
>seq9478
Length=16373
Score = 212 bits (234), Expect = 2e-52
Identities = 170/200 (85%), Gaps = 5/200 (3%)
Strand=Plus/Minus
Query 306 ATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364
||||||||||| || | |||| ||||| ||| ||| | ||| |||||| ||||||||||
Sbjct 5470 ATCTAATAAATGCATCGCTTCTAGAAGTTGGGATTTGTTGCACGTATTAACTCTAGAATT 5411
Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424
|| || |||||||| |||||| | |||||||||| |||| |||||||| |||||||| ||
Sbjct 5410 ACTACAGTTATCCAAGTAGTA-GATACTATCAAACAAACTATAACTGACTTAATGAGTCA 5352
Query 425 TTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGA 483
|||||| ||||| || | ||| || ||||||| ||||||||||||||||||||||||
Sbjct 5351 TTCGCAATTTCA--GTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGA 5294
Query 484 CAAGCATATGACTACTGGCA 503
||||||||||||||||||||
Sbjct 5293 CAAGCATATGACTACTGGCA 5274
>seq1237
Length=79597
Score = 168 bits (186), Expect = 2e-39
Identities = 129/150 (86%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTT 415
||||||||||| ||||||||| |||||| | ||| |||||| |||| |||||||||||
Sbjct 59506 TCTAGAATTACTACGGTTATCTGAGTAGTA-GATACCATCAAACAAACTATAACTGATTT 59564
Query 416 AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAA 474
|| |||||||| |||||||||| || | ||| || ||||||| |||||||| |||||
Sbjct 59565 AACGAGCCATTTGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATAACTTAA 59624
Query 475 TCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||
Sbjct 59625 TCTTTGAGACAAGCATATGACTACTGGCAG 59654
>seq13770
Length=10093
Score = 141 bits (156), Expect = 3e-31
Identities = 150/204 (74%), Gaps = 33/204 (16%)
Strand=Plus/Minus
Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTA 359
|||||||||||||||| || |||| ||||||||| ||| | ||| |||||| |||||
Sbjct 3438 TTTTTATCTAATAAATGCATTACTTCTAGAAGTCGGGATTTGTTGCACGTATTAACTCTA 3379
Query 360 GAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATG 419
|||||| || |||||||| ||||| || |||||||||| |||| |||||||| |||
Sbjct 3378 GAATTATTACAGTTATCCAAGTAGT-AGATACTATCAAACAAACTATAACTGACTTA--- 3323
Query 420 AGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTT 479
| | ||||||| ||||||||||||||||||||
Sbjct 3322 ----------------------------GTTCATACTTACACATGCATGGCTTAATCTTT 3291
Query 480 GAGACAAGCATATGACTACTGGCA 503
||||||||||||||||||||||||
Sbjct 3290 GAGACAAGCATATGACTACTGGCA 3267
>seq107214
Length=459
Score = 111 bits (122), Expect = 5e-22
Identities = 72/79 (91%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 208
||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 414 CTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGAT 355
Query 209 AGGGCAGAAATTTGAATGA 227
|||||||| ||||||||||
Sbjct 354 AGGGCAGATATTTGAATGA 336
>seq227
Length=156916
Score = 107 bits (118), Expect = 6e-21
Identities = 112/145 (77%), Gaps = 13/145 (9%)
Strand=Plus/Plus
Query 242 AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA------GGAGCCCCGAAGG--G 293
||||| |||||| ||| |||||| |||||||| ||| ||| | ||| |
Sbjct 139944 AAGGCTGTGCGATCCGTCGAGTTATCATGAATCATCAATACAACGGA----CAAAGCCCG 139999
Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352
||||| ||||||||||||||| || ||||||| ||||||||| ||| | ||| |||||
Sbjct 140000 CGTTGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGATTTGTTGCACGTATT 140059
Query 353 AGCTCTAGAATTACCACGGTTATCC 377
|||||||||||||| || |||||||
Sbjct 140060 AGCTCTAGAATTACTACAGTTATCC 140084
>seq171
Length=169594
Score = 80.6 bits (88), Expect = 8e-13
Identities = 113/155 (73%), Gaps = 8/155 (5%)
Strand=Plus/Plus
Query 92 TGCTGCCTTCCTTGGATGTGGTA--GCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
||||||||| ||| ||||||||| ||||||||||| | | |||||| || ||||
Sbjct 134503 TGCTGCCTTTCTTAGATGTGGTATAGCCGTTTCTCATGTTACCTCTCTAAAA----ACCC 134558
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTA-GGCCACTATCCTACCATCGAAAGTTGAT 208
|||| | | | |||| | ||||| || || || |||||||| | | ||||||||
Sbjct 134559 TAAT-CTCTATCACCCATCACCACCATTCTAAGGTCATTATCCTACTGTAGGAAGTTGAT 134617
Query 209 AGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243
||| || | |||||||||| || || ||||||
Sbjct 134618 AGGACAAATATTTGAATGATGAGTCACCAGCTCAA 134652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1505749901312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |