Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6231 161 8e-35 >seq6231 Length=25150 Score = 161 bits (178), Expect = 8e-35 Identities = 573/876 (65%), Gaps = 22/876 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||| ||| || ||| |||||||| ||||| || || || |||| Sbjct 17965 TGTTCCCGATTCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCT 18024 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | | | ||| | |||||||| || | | Sbjct 18025 GGACCGCCGAGGAGGTCGACCTCGACCAGGACCAGCGCCACTGGGAGACCCTAACCCCGG 18084 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 | || | || ||||| | || || | || ||||| ||||| || ||||| ||||| Sbjct 18085 GGGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTC 18144 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | || ||| | ||||||| || || |||||||||||| |||| Sbjct 18145 TCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTACAGGTCTCGGAGGCGCGTGCCTTCT 18204 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 ||||||||||||| || || ||||| |||| || ||||||||||| ||||| |||| | Sbjct 18205 ACGGCTTCCAGATCGCGATTGAGAACATCCATTCCGAGATGTACAGCCTTCTCCTCGAGA 18264 Query 61364 CGTACATCAGGGA-GCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 | || || | || ||| || | | | || | ||| ||| |||| || || || Sbjct 18265 CCTATATTAAAGACTCGGACGAGAAGAG-CCGTCTCTTCCGGGCCGTCGACACCATCCC- 18322 Query 61423 GCGGTGAAGC--GGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | | | || ||| || | |||||| | |||||| | | | | || | Sbjct 18323 -CTGCGTCGCCAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGG---CTCCGAGACGT 18378 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTTT 61539 | | || || | |||| ||||| || ||||| | || ||| | ||| | | | Sbjct 18379 TCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTCT 18438 Query 61540 GCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAG 61599 | ||| || |||||| | || || || || | |||||||||||||||||| || ||| Sbjct 18439 G-CGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAG 18497 Query 61600 TTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT-A 61658 ||||| || || || || ||| | || || || || || |||| | | |||| Sbjct 18498 TTGATCTCGCGAGATGAAGGCCTACACTGCGACTTCGCGTGCCTGCTCT--ACTCGCTCC 18555 Query 61659 TCTGG-TGAATCGTCCGTCGGAGGAGCGTGTG-GGTGAGATTGTTCGTGAGGCGGTAACT 61716 || || |||| | || | |||||||| ||| || | || || || || ||||| Sbjct 18556 TCCGGATGAAGC-TC--ACCGAGGAGCGCGTGAAGTCA-ATCGTCCGCGACGCGGTTGAG 18611 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 || || || || || ||||| || || | | | | || ||||| ||| Sbjct 18612 ATAGAGAGAGAGTTCGTGTGCGACGCGTTACCGTGCGCCTTAGTTGGAATGAACGGTGAT 18671 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGG-TATGAA 61835 || ||| ||||| || || || || || ||| | ||| ||| | ||||| || | Sbjct 18672 CTGATGAGCCAGTACATCGAGTTCGTGGCTGACAGGCTGGTGGGTGCGTTGGGATACG-G 18730 Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895 | |||||| || || | ||||||||||||| ||||| ||||| || | || || Sbjct 18731 GAAGATCTACGATGCGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAA 18790 Query 61896 GACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| ||||| || ||||| | || || || || || Sbjct 18791 GACCAATTTCTTTGAGAAGAGAGTTGGGGAGTACCA 18826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396076249326080