Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq413603 365 7e-99
seq363786 347 2e-93
seq549470 273 3e-71
seq550661 179 6e-43
seq675412 158 2e-36
seq565097 134 2e-29
>seq413603
Length=1102
Score = 365 bits (404), Expect = 7e-99
Identities = 237/256 (93%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
Sbjct 267 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 210
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 150
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
|| || |||||||||| || ||| |||| |||||||||||||||||||||||||||||
Sbjct 149 CCTGGGCCTGTCGGCCGTGGCTATAAACTCATTGAATACATCAGTGTAGCGCGCGTGCGG 90
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240
| |||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||
Sbjct 89 CACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTTCGCGGCCTAAAAG 30
Query 241 GCCAT-CTCCCTCGAA 255
||| | |||||| ||
Sbjct 29 GCCGTAGTCCCTCTAA 14
>seq363786
Length=1299
Score = 347 bits (384), Expect = 2e-93
Identities = 227/246 (92%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 1 CAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-CCTCGTTGAAG 58
Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTG 130
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 59 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCTGGGCCTG 118
Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190
|||||| || ||| |||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 119 TCGGCCGTGGCTATAAACTCATTGAATACATCAGTGTAGCGCGCGTGCGGCACAGAACAT 178
Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCC 249
|||||||||||||| ||||||||||||||||||||| || ||||||||||||| | |||
Sbjct 179 CTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTTCGCGGCCTAAAAGGCCGTAGTCC 238
Query 250 CTCGAA 255
||| ||
Sbjct 239 CTCTAA 244
>seq549470
Length=5376
Score = 273 bits (302), Expect = 3e-71
Identities = 183/203 (90%), Gaps = 1/203 (0%)
Strand=Plus/Plus
Query 41 TCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA 100
|| ||||||||||||||| |||| | |||||||||||||||||||||| ||||| |||||
Sbjct 366 TCACGCTTACTAGGAATT-CCTCATGGAAGACCAACAATTGCAATGATTTATCCTCATCA 424
Query 101 CGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160
| ||||||||||||||||||||||| | |||||||||| | ||| ||| ||||||||||
Sbjct 425 CAATGAAATTTCAAAGATTACCCGGGCATGTCGGCCAATGCTATAAACTTGTTGAATACA 484
Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 485 TCAGTGTAGCGCGTGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTATTATTGCCTC 544
Query 221 AAACTTCCGTGGCCTAAAAGGCC 243
||||||| | ||||||||||||
Sbjct 545 AAACTTCTGCAGCCTAAAAGGCC 567
>seq550661
Length=2254
Score = 179 bits (198), Expect = 6e-43
Identities = 140/167 (84%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCC 136
|||| ||||||||| || ||||||||||||||||||||||||| ||| || ||| ||
Sbjct 305 AATTACAATGATCTTTCTTCATCACGATGAAATTTCAAAGATTATCCGATCCGGTCAACC 364
Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196
|| | ||| |||||| ||| |||| |||||||| | |||||| ||||||||||| |||
Sbjct 365 AAAGCTATAAACTCGTCGAAGACATTAGTGTAGCATGTGTGCGGTCCAGAACATCTGAGG 424
Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 243
|||||| |||| | |||||||||||||||| || |||||||||||||
Sbjct 425 GCATCATAGACTTATTATTGCCTCAAACTTTCGCGGCCTAAAAGGCC 471
>seq675412
Length=14713
Score = 158 bits (174), Expect = 2e-36
Identities = 91/92 (99%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 10909 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-GGGCATCACAGACCTGT 10851
Query 212 TATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 243
||||||||||||||||||||||||||||||||
Sbjct 10850 TATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 10819
>seq565097
Length=2431
Score = 134 bits (148), Expect = 2e-29
Identities = 82/87 (94%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 94 CCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTT 153
|||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 1296 CCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTTATAAACTCGTT 1355
Query 154 GAATACATCAGTGTAGCGCGCGTGCGG 180
|||||||||||||||||| | ||||||
Sbjct 1356 GAATACATCAGTGTAGCGTGTGTGCGG 1382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 746213611920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |