Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq413603 365 7e-99 seq363786 347 2e-93 seq549470 273 3e-71 seq550661 179 6e-43 seq675412 158 2e-36 seq565097 134 2e-29 >seq413603 Length=1102 Score = 365 bits (404), Expect = 7e-99 Identities = 237/256 (93%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| | Sbjct 267 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-C 210 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 150 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || || |||||||||| || ||| |||| ||||||||||||||||||||||||||||| Sbjct 149 CCTGGGCCTGTCGGCCGTGGCTATAAACTCATTGAATACATCAGTGTAGCGCGCGTGCGG 90 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 | |||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| Sbjct 89 CACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTTCGCGGCCTAAAAG 30 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 29 GCCGTAGTCCCTCTAA 14 >seq363786 Length=1299 Score = 347 bits (384), Expect = 2e-93 Identities = 227/246 (92%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| Sbjct 1 CAGGGACGTAGTCAACGCGAGCT-GATGACTCGCACTTACTAGGAATT-CCTCGTTGAAG 58 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTG 130 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 59 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCTGGGCCTG 118 Query 131 TCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT 190 |||||| || ||| |||| |||||||||||||||||||||||||||||| |||||||| Sbjct 119 TCGGCCGTGGCTATAAACTCATTGAATACATCAGTGTAGCGCGCGTGCGGCACAGAACAT 178 Query 191 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCC 249 |||||||||||||| ||||||||||||||||||||| || ||||||||||||| | ||| Sbjct 179 CTAAGGGCATCACAAACCTGTTATTGCCTCAAACTTTCGCGGCCTAAAAGGCCGTAGTCC 238 Query 250 CTCGAA 255 ||| || Sbjct 239 CTCTAA 244 >seq549470 Length=5376 Score = 273 bits (302), Expect = 3e-71 Identities = 183/203 (90%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 41 TCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCA 100 || ||||||||||||||| |||| | |||||||||||||||||||||| ||||| ||||| Sbjct 366 TCACGCTTACTAGGAATT-CCTCATGGAAGACCAACAATTGCAATGATTTATCCTCATCA 424 Query 101 CGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA 160 | ||||||||||||||||||||||| | |||||||||| | ||| ||| |||||||||| Sbjct 425 CAATGAAATTTCAAAGATTACCCGGGCATGTCGGCCAATGCTATAAACTTGTTGAATACA 484 Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 485 TCAGTGTAGCGCGTGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTATTATTGCCTC 544 Query 221 AAACTTCCGTGGCCTAAAAGGCC 243 ||||||| | |||||||||||| Sbjct 545 AAACTTCTGCAGCCTAAAAGGCC 567 >seq550661 Length=2254 Score = 179 bits (198), Expect = 6e-43 Identities = 140/167 (84%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 77 AATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCC 136 |||| ||||||||| || ||||||||||||||||||||||||| ||| || ||| || Sbjct 305 AATTACAATGATCTTTCTTCATCACGATGAAATTTCAAAGATTATCCGATCCGGTCAACC 364 Query 137 AAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGG 196 || | ||| |||||| ||| |||| |||||||| | |||||| ||||||||||| ||| Sbjct 365 AAAGCTATAAACTCGTCGAAGACATTAGTGTAGCATGTGTGCGGTCCAGAACATCTGAGG 424 Query 197 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 243 |||||| |||| | |||||||||||||||| || ||||||||||||| Sbjct 425 GCATCATAGACTTATTATTGCCTCAAACTTTCGCGGCCTAAAAGGCC 471 >seq675412 Length=14713 Score = 158 bits (174), Expect = 2e-36 Identities = 91/92 (99%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 152 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGT 211 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 10909 TTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-GGGCATCACAGACCTGT 10851 Query 212 TATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 243 |||||||||||||||||||||||||||||||| Sbjct 10850 TATTGCCTCAAACTTCCGTGGCCTAAAAGGCC 10819 >seq565097 Length=2431 Score = 134 bits (148), Expect = 2e-29 Identities = 82/87 (94%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 94 CCCATCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTT 153 |||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||| Sbjct 1296 CCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTTATAAACTCGTT 1355 Query 154 GAATACATCAGTGTAGCGCGCGTGCGG 180 |||||||||||||||||| | |||||| Sbjct 1356 GAATACATCAGTGTAGCGTGTGTGCGG 1382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746213611920