Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq549470 224 2e-56 seq161286 147 4e-33 seq493742 118 2e-24 seq430003 118 2e-24 seq782537 113 8e-23 seq361426 89.7 9e-16 seq560068 75.2 2e-11 >seq549470 Length=5376 Score = 224 bits (248), Expect = 2e-56 Identities = 201/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 1218 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1159 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || ||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 1158 GGGATACCATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1100 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| |||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 1099 TAACAGGGGCAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1040 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 1039 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 981 Query 311 GTTAGGGG 318 ||| |||| Sbjct 980 GTTGGGGG 973 >seq161286 Length=647 Score = 147 bits (162), Expect = 4e-33 Identities = 182/245 (74%), Gaps = 7/245 (3%) Strand=Plus/Plus Query 79 TTTGAAAAAATTA----GAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133 ||||||||||||| ||||| |||| | | |||| ||||| ||||||||||||| | Sbjct 258 TTTGAAAAAATTAAATAGAGTGCTCAAGGTAAGCCTATGCTCTTCATACATTAGCATGAA 317 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 | || | |||||| | || | ||||| ||||| || ||| ||| || |||| Sbjct 318 ACAAGATTATAGGATTT-CGATCCTATTACGTTGGCCTCCGGGATTTGAGTAGTGTTTAA 376 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| | | ||| | | ||||| || |||||||| ||||||||| | ||||| | Sbjct 377 TAGGGACATTTGGGAGCATTCGTATTTTATAGTCAGAGGAGAAATTCTTAGGTTTATGAA 436 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||| ||||| | | |||||||||||||||||| | ||||||||||| Sbjct 437 AGACGAACAACTGCAAAAGCATCTGCTAAGGATGTTTTCATTAATTA-AGAACGAAAGTT 495 Query 314 AGGGG 318 |||| Sbjct 496 GGGGG 500 >seq493742 Length=1287 Score = 118 bits (130), Expect = 2e-24 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 152 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 93 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 92 GGGATAACATTATAGGA-TTTCGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 34 Query 191 TAATAGGGATAGTCGGGGG 209 ||| ||||| ||||||||| Sbjct 33 TAACAGGGACAGTCGGGGG 15 >seq430003 Length=691 Score = 118 bits (130), Expect = 2e-24 Identities = 111/139 (80%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| ||||| | |||||||||||| Sbjct 279 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTATATACATTAGCAT 220 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | | || ||||| |||| | ||| || |||||||| Sbjct 219 GGGATAACATTATAGGA-TTTCAGTCCTATTACATTGGCCTTCGGGATCGGAGTAATGAT 161 Query 191 TAATAGGGATAGTCGGGGG 209 ||||||||| ||||||||| Sbjct 160 TAATAGGGACAGTCGGGGG 142 >seq782537 Length=2192 Score = 113 bits (124), Expect = 8e-23 Identities = 110/139 (79%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 334 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 393 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | | || ||||| ||||| | ||| || |||||||| Sbjct 394 GGGATAACATTATAGGA-TTTCAGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 452 Query 191 TAATAGGGATAGTCGGGGG 209 ||| ||||| ||||||||| Sbjct 453 TAACAGGGACAGTCGGGGG 471 >seq361426 Length=843 Score = 89.7 bits (98), Expect = 9e-16 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||||| |||| |||||||||| |||||||| ||| |||| | ||| ||||| || Sbjct 380 CTGTTACTCTGAAGAAATTAGAGTACTCAAAGCAAACCTACGCTCTGTATAAATTAGTAT 439 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||||| |||||| | || | ||||| ||||| | | | | || |||||||| Sbjct 440 GGAATAATATTATAGGA-TTTCGATCCTATTACGTTGGCCTTTGGAATCGGAGTAATGAT 498 Query 191 TAATAGGGATAGTCGGGG 208 ||| || || |||| ||| Sbjct 499 TAACAGCGACAGTCAGGG 516 >seq560068 Length=1263 Score = 75.2 bits (82), Expect = 2e-11 Identities = 127/179 (71%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 ||| |||||| |||||||||| | ||| || | || || | ||||||||||||| Sbjct 640 TTAGTTTGAATAAATTAGAGTACTTAAAACAAGTCTACACTTTGCATACATTAGCATGAG 699 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT-TCTAGGACCGCCGTAATGATTA 192 |||| | |||||| | | || ||||| ||||| || || | | |||||||||| Sbjct 700 ATAACATTATAGGATTT-CAGTACTATTACGTTGGCAATCGAG-ATTGTAGTAATGATTA 757 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 | | || |||| || | | ||||| || || |||||| ||||| ||||||| ||| Sbjct 758 ACAAGGCTAGTTGGAAGCATTCGTATTTTATAGTTAGAGGTAAAATTATTGGATTAATT 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 907930676224