Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq549470 224 2e-56
seq161286 147 4e-33
seq493742 118 2e-24
seq430003 118 2e-24
seq782537 113 8e-23
seq361426 89.7 9e-16
seq560068 75.2 2e-11
>seq549470
Length=5376
Score = 224 bits (248), Expect = 2e-56
Identities = 201/248 (81%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 1218 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 1159
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| ||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 1158 GGGATACCATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 1100
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| |||| ||||||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 1099 TAACAGGGGCAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 1040
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 1039 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 981
Query 311 GTTAGGGG 318
||| ||||
Sbjct 980 GTTGGGGG 973
>seq161286
Length=647
Score = 147 bits (162), Expect = 4e-33
Identities = 182/245 (74%), Gaps = 7/245 (3%)
Strand=Plus/Plus
Query 79 TTTGAAAAAATTA----GAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCATGGA 133
||||||||||||| ||||| |||| | | |||| ||||| ||||||||||||| |
Sbjct 258 TTTGAAAAAATTAAATAGAGTGCTCAAGGTAAGCCTATGCTCTTCATACATTAGCATGAA 317
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193
| || | |||||| | || | ||||| ||||| || ||| ||| || ||||
Sbjct 318 ACAAGATTATAGGATTT-CGATCCTATTACGTTGGCCTCCGGGATTTGAGTAGTGTTTAA 376
Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253
|||||| | | ||| | | ||||| || |||||||| ||||||||| | ||||| |
Sbjct 377 TAGGGACATTTGGGAGCATTCGTATTTTATAGTCAGAGGAGAAATTCTTAGGTTTATGAA 436
Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313
|||| ||| ||||| ||||| | | |||||||||||||||||| | |||||||||||
Sbjct 437 AGACGAACAACTGCAAAAGCATCTGCTAAGGATGTTTTCATTAATTA-AGAACGAAAGTT 495
Query 314 AGGGG 318
||||
Sbjct 496 GGGGG 500
>seq493742
Length=1287
Score = 118 bits (130), Expect = 2e-24
Identities = 111/139 (80%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 152 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 93
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 92 GGGATAACATTATAGGA-TTTCGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 34
Query 191 TAATAGGGATAGTCGGGGG 209
||| ||||| |||||||||
Sbjct 33 TAACAGGGACAGTCGGGGG 15
>seq430003
Length=691
Score = 118 bits (130), Expect = 2e-24
Identities = 111/139 (80%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| ||||| | ||||||||||||
Sbjct 279 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTATGCTCTATATACATTAGCAT 220
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | | || ||||| |||| | ||| || ||||||||
Sbjct 219 GGGATAACATTATAGGA-TTTCAGTCCTATTACATTGGCCTTCGGGATCGGAGTAATGAT 161
Query 191 TAATAGGGATAGTCGGGGG 209
||||||||| |||||||||
Sbjct 160 TAATAGGGACAGTCGGGGG 142
>seq782537
Length=2192
Score = 113 bits (124), Expect = 8e-23
Identities = 110/139 (79%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 334 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 393
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | | || ||||| ||||| | ||| || ||||||||
Sbjct 394 GGGATAACATTATAGGA-TTTCAGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 452
Query 191 TAATAGGGATAGTCGGGGG 209
||| ||||| |||||||||
Sbjct 453 TAACAGGGACAGTCGGGGG 471
>seq361426
Length=843
Score = 89.7 bits (98), Expect = 9e-16
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| ||||| |||| |||||||||| |||||||| ||| |||| | ||| ||||| ||
Sbjct 380 CTGTTACTCTGAAGAAATTAGAGTACTCAAAGCAAACCTACGCTCTGTATAAATTAGTAT 439
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
||||||||| |||||| | || | ||||| ||||| | | | | || ||||||||
Sbjct 440 GGAATAATATTATAGGA-TTTCGATCCTATTACGTTGGCCTTTGGAATCGGAGTAATGAT 498
Query 191 TAATAGGGATAGTCGGGG 208
||| || || |||| |||
Sbjct 499 TAACAGCGACAGTCAGGG 516
>seq560068
Length=1263
Score = 75.2 bits (82), Expect = 2e-11
Identities = 127/179 (71%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133
||| |||||| |||||||||| | ||| || | || || | |||||||||||||
Sbjct 640 TTAGTTTGAATAAATTAGAGTACTTAAAACAAGTCTACACTTTGCATACATTAGCATGAG 699
Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTT-TCTAGGACCGCCGTAATGATTA 192
|||| | |||||| | | || ||||| ||||| || || | | ||||||||||
Sbjct 700 ATAACATTATAGGATTT-CAGTACTATTACGTTGGCAATCGAG-ATTGTAGTAATGATTA 757
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251
| | || |||| || | | ||||| || || |||||| ||||| ||||||| |||
Sbjct 758 ACAAGGCTAGTTGGAAGCATTCGTATTTTATAGTTAGAGGTAAAATTATTGGATTAATT 816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 907930676224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |