Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq664024 192 2e-46 seq144292 172 2e-40 seq399674 163 1e-37 seq549470 100 1e-18 >seq664024 Length=1556 Score = 192 bits (212), Expect = 2e-46 Identities = 216/284 (76%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCA 463 || ||||||||| ||||||| ||||||||||| |||| | ||||||| ||| | | Sbjct 349 CGACCCGTCTTGAAACACGGGCCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTAGTA 408 Query 464 AACCCGT---GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA-GGGTGCACCATC 519 ||||| | |||| | |||| ||| || | | ||| || ||||||||| | Sbjct 409 AACCCATAAGGCGC---AGGAAAACTAACCGACGCGATCCCCCTCGAGGGGTGCACCGCC 465 Query 520 GACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAG 579 |||||| | |||| | | || || || || | ||||||| || | |||||| ||||| Sbjct 466 GACCGACCTTGATCTTCTGAGAAGGGTTCGA--ATGAGCATACCTTTCGGGACCTGAAAG 523 Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 |||||||||||||| ||| | ||| ||||||||||||||||||||||||||| ||||||| Sbjct 524 ATGGTGAACTATGCTTGAGTGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCG 583 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| | ||||||||| ||||| | ||||||||||||| || Sbjct 584 ATACTGACATGCAAATCGTTCGTCTGACTTGGGTATAGGGGTGA 627 Score = 114 bits (126), Expect = 5e-23 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 71 TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGA 130 |||| |||||||| | || || |||||||| || |||||||||||||| ||||||| Sbjct 1 TGGGCGGTAAATTCCATCCAAGGCTAAATACAGGTGAGAGACCGATAGCGAACAAGTACC 60 Query 131 GTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAA 190 | || ||||||||||||| |||||| ||||||||| ||| || | ||||||||| | Sbjct 61 GCGAGGGAAAGATGAAAAGTACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGG 120 Query 191 AGGGAAGC 198 | |||||| Sbjct 121 ATGGAAGC 128 >seq144292 Length=320 Score = 172 bits (190), Expect = 2e-40 Identities = 176/224 (79%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 221 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 162 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCG-TGAGGG-TGCACCATCG 520 ||||||| | ||||| ||| ||| || ||||| ||| |||||| |||||| || Sbjct 161 AACCCGTAAGGCGTAAGGAAGCTGATTGG---TGGGATCCCCCTGAGGGGTGCACCGCCG 105 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 104 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATACCTGTCGGGACCCGAAAGA 45 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||||||||||||||| ||| |||||||||||||||||||| Sbjct 44 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGG 1 >seq399674 Length=451 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 3 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 62 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 63 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 122 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 123 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 167 >seq549470 Length=5376 Score = 100 bits (110), Expect = 1e-18 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| | | |||||||||||||| | || |||| |||||||| | || || || Sbjct 110 TCGGCGAGTCGGGCTTTTTGGGAATGCAGCCCCAATTGGGCGGTAAATTCCATCCAAGGC 51 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 |||||| || |||||||||||||| ||||||| | || |||||||| Sbjct 50 TAAATACAGGTGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2062962522400