Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq606544 141 1e-31 seq552020 120 4e-25 seq685440 114 2e-23 seq537721 104 3e-20 seq432620 104 3e-20 seq260735 98.7 1e-18 seq772317 95.1 2e-17 seq589331 73.4 5e-11 >seq606544 Length=821 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 572 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 630 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 631 TGTGTTTTTGGTAAACAGTCGCCCAGGCCTGGTCACTGCGACCCCCT------------- 677 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 678 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 731 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 732 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 791 Query 246 GTA 248 ||| Sbjct 792 GTA 794 >seq552020 Length=8072 Score = 120 bits (132), Expect = 4e-25 Identities = 168/236 (71%), Gaps = 20/236 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3047 CCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3105 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||| |||||| || || |||||| | || Sbjct 3106 TGTGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGCGATCCCCT------------- 3152 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||| | ||||| Sbjct 3153 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCT 3206 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241 || | |||| | || | ||| ||||||||||||| ||||||||||||||| Sbjct 3207 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTT 3262 >seq685440 Length=1708 Score = 114 bits (126), Expect = 2e-23 Identities = 173/244 (71%), Gaps = 24/244 (10%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| |||||| ||||| || |||||| | ||||| ||| ||| Sbjct 1417 CTTAACCTTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAG 1475 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCT 118 ||||||||||||| |||||||||||| || || || ||||| || || Sbjct 1476 AGACCTGTGTTTTTGGTAAACAGTCGC--CCAGGCATGGTCACTGCGTCCCCCT------ 1527 Query 119 CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | || || | ||||||||||||||||||||||||||| |||||| || Sbjct 1528 -------TTGTG----AGGAT--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTCG 1574 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | ||||||| | |||| | || | ||| ||||||||||||| |||||||||||| Sbjct 1575 AGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCG 1634 Query 239 GTTT 242 | || Sbjct 1635 GGTT 1638 >seq537721 Length=570 Score = 104 bits (114), Expect = 3e-20 Identities = 165/235 (70%), Gaps = 24/235 (10%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| |||||| ||||| || |||||| | ||||| ||| ||| |||| Sbjct 441 CCTTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAGAGACC 383 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCTCAACA 123 ||||||||| |||||||||||| || || || |||||||| || Sbjct 382 TGTGTTTTTGGTAAACAGTCGC--CCGGGCATGGTCACTGCGACCCCCT----------- 336 Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 | || || | |||||||||||||||||||||| |||| |||||| ||| ||| Sbjct 335 --TTGTG----AGGAC--GCACCCCTTCTCCCGAAGTTACTGGGCTATTTTGTCGAGTTC 284 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 |||| | |||| | || | ||| ||||||||||||| |||||| ||||| Sbjct 283 CTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTTTGTCG 229 >seq432620 Length=1267 Score = 104 bits (114), Expect = 3e-20 Identities = 133/181 (73%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||| ||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 192 CCTCCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 134 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||| |||||| |||||||||||| ||| | | | ||| | | | |||| | Sbjct 133 TGTATTTTTAATAAACAGTCGCTACCCCCAGGTATGTGCCGCTTTCCTAA--TCAAAAGA 76 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 75 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCT 25 Query 186 T 186 | Sbjct 24 T 24 >seq260735 Length=365 Score = 98.7 bits (108), Expect = 1e-18 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 135 AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAG 194 || |||| || ||||||||| ||||||||||||| |||||| || ||||||| | || Sbjct 195 AGAAGTGCCATCCCTTCTCCTGAAGTTACGGGGCTATTTTGTTGAGTTCCTTAGAAAGAG 136 Query 195 TTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 135 TTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 82 >seq772317 Length=4642 Score = 95.1 bits (104), Expect = 2e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 ||||||||||||||||||||||| || ||||||||||| |||||| || |||| | | Sbjct 243 GCACCCCTTCTCCCGAAGTTACGAGGTCATTTTGCCGAGTTCCTTTGACATGGTTCTCTC 302 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | | || ||| || |||||| || ||| ||||||||||| |||| Sbjct 303 AAGCACCCTAGAATACTCTACTTGTTCACTTGTGTCGGTTTGAGGTA 349 >seq589331 Length=528 Score = 73.4 bits (80), Expect = 5e-11 Identities = 66/82 (80%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 113 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 171 Query 66 TGTGTTTTTAGTAAACAGTCGC 87 ||||||||| ||||||||| || Sbjct 172 TGTGTTTTTGGTAAACAGTTGC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689056824624