Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq606544 141 1e-31
seq552020 120 4e-25
seq685440 114 2e-23
seq537721 104 3e-20
seq432620 104 3e-20
seq260735 98.7 1e-18
seq772317 95.1 2e-17
seq589331 73.4 5e-11
>seq606544
Length=821
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 572 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 630
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 631 TGTGTTTTTGGTAAACAGTCGCCCAGGCCTGGTCACTGCGACCCCCT------------- 677
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 678 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 731
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 732 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 791
Query 246 GTA 248
|||
Sbjct 792 GTA 794
>seq552020
Length=8072
Score = 120 bits (132), Expect = 4e-25
Identities = 168/236 (71%), Gaps = 20/236 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| |||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 3047 CCTTCCGGCACTGGGCAGGCGTCAACCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3105
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| ||||| |||||| || || |||||| | ||
Sbjct 3106 TGTGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGCGATCCCCT------------- 3152
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 3153 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCT 3206
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTT 241
|| | |||| | || | ||| ||||||||||||| |||||||||||||||
Sbjct 3207 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTT 3262
>seq685440
Length=1708
Score = 114 bits (126), Expect = 2e-23
Identities = 173/244 (71%), Gaps = 24/244 (10%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| |||||| ||||| || |||||| | ||||| ||| |||
Sbjct 1417 CTTAACCTTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAG 1475
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCT 118
||||||||||||| |||||||||||| || || || ||||| || ||
Sbjct 1476 AGACCTGTGTTTTTGGTAAACAGTCGC--CCAGGCATGGTCACTGCGTCCCCCT------ 1527
Query 119 CAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178
| || || | ||||||||||||||||||||||||||| |||||| ||
Sbjct 1528 -------TTGTG----AGGAT--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGTCG 1574
Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238
| ||||||| | |||| | || | ||| ||||||||||||| ||||||||||||
Sbjct 1575 AGTTCCTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCG 1634
Query 239 GTTT 242
| ||
Sbjct 1635 GGTT 1638
>seq537721
Length=570
Score = 104 bits (114), Expect = 3e-20
Identities = 165/235 (70%), Gaps = 24/235 (10%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| |||||| ||||| || |||||| | ||||| ||| ||| ||||
Sbjct 441 CCTTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAGAGACC 383
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTAT--TCTCTGCGACCACCACCAGCTCAACA 123
||||||||| |||||||||||| || || || |||||||| ||
Sbjct 382 TGTGTTTTTGGTAAACAGTCGC--CCGGGCATGGTCACTGCGACCCCCT----------- 336
Query 124 CGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183
| || || | |||||||||||||||||||||| |||| |||||| ||| |||
Sbjct 335 --TTGTG----AGGAC--GCACCCCTTCTCCCGAAGTTACTGGGCTATTTTGTCGAGTTC 284
Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238
|||| | |||| | || | ||| ||||||||||||| |||||| |||||
Sbjct 283 CTTAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTTTGTCG 229
>seq432620
Length=1267
Score = 104 bits (114), Expect = 3e-20
Identities = 133/181 (73%), Gaps = 12/181 (7%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||| ||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 192 CCTCCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 134
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||| |||||| |||||||||||| ||| | | | ||| | | | |||| |
Sbjct 133 TGTATTTTTAATAAACAGTCGCTACCCCCAGGTATGTGCCGCTTTCCTAA--TCAAAAGA 76
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 75 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCT 25
Query 186 T 186
|
Sbjct 24 T 24
>seq260735
Length=365
Score = 98.7 bits (108), Expect = 1e-18
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 135 AGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAG 194
|| |||| || ||||||||| ||||||||||||| |||||| || ||||||| | ||
Sbjct 195 AGAAGTGCCATCCCTTCTCCTGAAGTTACGGGGCTATTTTGTTGAGTTCCTTAGAAAGAG 136
Query 195 TTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | || | ||| ||||||||||||| |||||||||||||||| ||||
Sbjct 135 TTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 82
>seq772317
Length=4642
Score = 95.1 bits (104), Expect = 2e-17
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201
||||||||||||||||||||||| || ||||||||||| |||||| || |||| | |
Sbjct 243 GCACCCCTTCTCCCGAAGTTACGAGGTCATTTTGCCGAGTTCCTTTGACATGGTTCTCTC 302
Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| | || ||| || |||||| || ||| ||||||||||| ||||
Sbjct 303 AAGCACCCTAGAATACTCTACTTGTTCACTTGTGTCGGTTTGAGGTA 349
>seq589331
Length=528
Score = 73.4 bits (80), Expect = 5e-11
Identities = 66/82 (80%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | |||| || ||| || ||||
Sbjct 113 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 171
Query 66 TGTGTTTTTAGTAAACAGTCGC 87
||||||||| ||||||||| ||
Sbjct 172 TGTGTTTTTGGTAAACAGTTGC 193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 689056824624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |