Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq606544 87.8 2e-15 seq552020 87.8 2e-15 seq537721 82.4 8e-14 seq685440 78.8 1e-12 seq772317 73.4 4e-11 >seq606544 Length=821 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 733 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 676 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| | ||| |||||||| |||||||||||| || Sbjct 675 GGGGTCGCAGTGACCAGGCCTGGGCGACTGTTTACCAAAAACACAGGTCT 626 >seq552020 Length=8072 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| || Sbjct 3208 TAAGGAACTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGG 3149 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 || ||||| || ||| || ||| ||| |||| |||||||||||| || Sbjct 3148 GA--TCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCT 3101 >seq537721 Length=570 Score = 82.4 bits (90), Expect = 8e-14 Identities = 89/117 (76%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| |||||||||||| || |||| | | | || ||| | Sbjct 280 TAAGGAACTCGACAAAATAGCCCAGTAACTTCGGGAGAAGGGGTGCGTCCTCACAAA--G 337 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||||| || | | || ||| |||||||| |||||||||||| || ||| || Sbjct 338 GGGGTCGCAGTGACCATGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 394 >seq685440 Length=1708 Score = 78.8 bits (86), Expect = 1e-12 Identities = 88/117 (75%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| | |||| | ||| |||||||||||| || |||| | | | || ||| | Sbjct 1583 TAAGGAACTCGACAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCATCCTCACAAA--G 1526 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | || ||||| || | | | ||| |||||||| |||||||||||| || ||| || Sbjct 1525 GGGGACGCAGTGACCATGCCTGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 1469 >seq772317 Length=4642 Score = 73.4 bits (80), Expect = 4e-11 Identities = 76/100 (76%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||| ||| || ||||||| ||| || | ||| Sbjct 344 CAAACCGACACAAGTGAACAAGTAGAGTATTCTAGGGTGCTTGAGAGAACCATGTCAAAG 285 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| ||||| |||||||||||| || |||| Sbjct 284 GAACTCGGCAAAATGACCTCGTAACTTCGGGAGAAGGGGT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527112593952