Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq606544 87.8 2e-15 seq589331 84.2 2e-14 seq552020 80.6 3e-13 seq432620 77.0 3e-12 seq685440 75.2 1e-11 seq537721 75.2 1e-11 seq334330 75.2 1e-11 >seq606544 Length=821 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 673 GGTCGCAGTGACCAGGCCTGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 614 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 613 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 568 >seq589331 Length=528 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| || |||||||| |||||||||| ||| ||||| || Sbjct 214 GGTCGCAGTGACCAGGCCCGGGCAACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 155 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 154 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 109 >seq552020 Length=8072 Score = 80.6 bits (88), Expect = 3e-13 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 49 TCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAA 108 ||| || |||||||| |||||| |||| |||||||||| ||| ||||| || || Sbjct 3146 TCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCTCCGCAAAGTCGTAA 3087 Query 109 GTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 | | |||| ||| |||||||||||| |||||||||||| || Sbjct 3086 GACCATGTATGGGGGTTGACGCCTGCCCAGTGCCGGAAGGTCAA 3043 >seq432620 Length=1267 Score = 77.0 bits (84), Expect = 3e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 ||||| || | |||||||||||||||||| |||| ||||||| || | || || Sbjct 99 ATACCTGGGGGTAGCGACTGTTTATTAAAAATACAGGACTCTGCTAAGTGGTAACACGAT 158 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| || |||| Sbjct 159 GTATAGAGTCTGACACCTGCCCGGTGCTGGGAGGT 193 >seq685440 Length=1708 Score = 75.2 bits (82), Expect = 1e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||| ||| ||||||||||| |||||||||| ||||||||| | ||| | || Sbjct 1513 ACCATGCCTGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTTGTAAGACCATGT 1454 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||| |||||| ||||||||||||||| Sbjct 1453 ATGGGGGCTGACACCTGCCTAGTGCCGGAAGGTTAA 1418 >seq537721 Length=570 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||| ||| ||||||||||| |||||||||| ||||||||| | Sbjct 340 GGTCGCAGTGACCATGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTTGT 399 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||| |||||| |||||||||||| || Sbjct 400 AAGACCATGTATGGGGGCTGACACCTGCCTAGTGCCGGAAGGTCAA 445 >seq334330 Length=584 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| | ||||||||| ||||||| || ||| ||||| | Sbjct 438 GGTCGCAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACATAGGTCTCCGCAAAGTCAT 497 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 498 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473131183728