Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq549470 255 9e-66
seq550661 145 1e-32
seq413603 127 3e-27
seq363786 127 3e-27
seq675412 114 2e-23
>seq549470
Length=5376
Score = 255 bits (282), Expect = 9e-66
Identities = 205/245 (84%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 485 TCAGTGTAGCGCGTGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTATTATTGCCTC 544
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-T 133
||||||| | || ||| | ||||||| ||||||||| ||| | | ||| |
Sbjct 545 AAACTTCTGCAGCCTAAAAGGCCGTAGTCCCGCTAAGAAGCTGGCCGCTGAGGGATACCT 604
Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193
| |||| || ||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 605 CCGCATAGCTAGTTGGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCG 664
Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
Sbjct 665 CTCCACCAACTAAGAACGAACATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 724
Query 254 CTGTC 258
|||||
Sbjct 725 CTGTC 729
>seq550661
Length=2254
Score = 145 bits (160), Expect = 1e-32
Identities = 183/252 (73%), Gaps = 22/252 (9%)
Strand=Plus/Plus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77
|||||||| | |||||| ||||||||||| ||||||||| |||| | ||||||||||||
Sbjct 391 AGTGTAGCATGTGTGCGGTCCAGAACATCTGAGGGCATCATAGACTTATTATTGCCTCAA 450
Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC----------ACCAAC 127
|||| | | || ||| | |||||||| | | || | || ||| |
Sbjct 451 ACTTTCGCGGCCTAAAAGGCCGTAGTCCCTTTTAAAACCTGGCTGGGGAGGGATACCCCC 510
Query 128 -CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186
|||||| || |||||| | | ||||||||||| ||| ||||||| | |
Sbjct 511 GCATAGT---------TAGTTAGCAAGCTGAGGTCTCGTTCATTAATATAATTAACTATA 561
Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246
|||||| || || ||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 562 CAAATCGCTTCATCAACTAAGAACAGCCATGCACCAC--CCCATAGAATCAAGAAAAAGC 619
Query 247 TATCAATCTGTC 258
| | ||||||
Sbjct 620 TCTTGGTCTGTC 631
>seq413603
Length=1102
Score = 127 bits (140), Expect = 3e-27
Identities = 88/100 (88%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 109 TCAGTGTAGCGCGCGTGCGGCACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTC 50
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
|||||| | | || ||| | ||||||||||||||||
Sbjct 49 AAACTTTCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAG 10
>seq363786
Length=1299
Score = 127 bits (140), Expect = 3e-27
Identities = 88/100 (88%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 149 TCAGTGTAGCGCGCGTGCGGCACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTC 208
Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115
|||||| | | || ||| | ||||||||||||||||
Sbjct 209 AAACTTTCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAG 248
>seq675412
Length=14713
Score = 114 bits (126), Expect = 2e-23
Identities = 67/68 (99%), Gaps = 1/68 (1%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 10900 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-GGGCATCACAGACCTGTTATTGCCTC 10842
Query 76 AAACTTCC 83
||||||||
Sbjct 10841 AAACTTCC 10834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 790668890928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |