Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq549470 255 9e-66 seq550661 145 1e-32 seq413603 127 3e-27 seq363786 127 3e-27 seq675412 114 2e-23 >seq549470 Length=5376 Score = 255 bits (282), Expect = 9e-66 Identities = 205/245 (84%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 485 TCAGTGTAGCGCGTGTGCGGCCCAAAACATCTAAGGGCATCACAGACCTATTATTGCCTC 544 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACC-ATAG-T 133 ||||||| | || ||| | ||||||| ||||||||| ||| | | ||| | Sbjct 545 AAACTTCTGCAGCCTAAAAGGCCGTAGTCCCGCTAAGAAGCTGGCCGCTGAGGGATACCT 604 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | |||| || ||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 605 CCGCATAGCTAGTTGGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCG 664 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | Sbjct 665 CTCCACCAACTAAGAACGAACATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGT 724 Query 254 CTGTC 258 ||||| Sbjct 725 CTGTC 729 >seq550661 Length=2254 Score = 145 bits (160), Expect = 1e-32 Identities = 183/252 (73%), Gaps = 22/252 (9%) Strand=Plus/Plus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 |||||||| | |||||| ||||||||||| ||||||||| |||| | |||||||||||| Sbjct 391 AGTGTAGCATGTGTGCGGTCCAGAACATCTGAGGGCATCATAGACTTATTATTGCCTCAA 450 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC----------ACCAAC 127 |||| | | || ||| | |||||||| | | || | || ||| | Sbjct 451 ACTTTCGCGGCCTAAAAGGCCGTAGTCCCTTTTAAAACCTGGCTGGGGAGGGATACCCCC 510 Query 128 -CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 |||||| || |||||| | | ||||||||||| ||| ||||||| | | Sbjct 511 GCATAGT---------TAGTTAGCAAGCTGAGGTCTCGTTCATTAATATAATTAACTATA 561 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 |||||| || || ||||||||||| |||||||||||| ||||||||||||||||| ||| Sbjct 562 CAAATCGCTTCATCAACTAAGAACAGCCATGCACCAC--CCCATAGAATCAAGAAAAAGC 619 Query 247 TATCAATCTGTC 258 | | |||||| Sbjct 620 TCTTGGTCTGTC 631 >seq413603 Length=1102 Score = 127 bits (140), Expect = 3e-27 Identities = 88/100 (88%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 109 TCAGTGTAGCGCGCGTGCGGCACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTC 50 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||| | | || ||| | |||||||||||||||| Sbjct 49 AAACTTTCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAG 10 >seq363786 Length=1299 Score = 127 bits (140), Expect = 3e-27 Identities = 88/100 (88%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 149 TCAGTGTAGCGCGCGTGCGGCACAGAACATCTAAGGGCATCACAAACCTGTTATTGCCTC 208 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||||| | | || ||| | |||||||||||||||| Sbjct 209 AAACTTTCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAG 248 >seq675412 Length=14713 Score = 114 bits (126), Expect = 2e-23 Identities = 67/68 (99%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 10900 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA-GGGCATCACAGACCTGTTATTGCCTC 10842 Query 76 AAACTTCC 83 |||||||| Sbjct 10841 AAACTTCC 10834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 790668890928