Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq664025 372 5e-101 seq722151 246 5e-63 seq532454 215 9e-54 seq241489 188 1e-45 seq596019 147 4e-33 seq751263 91.5 2e-16 seq130756 91.5 2e-16 >seq664025 Length=3750 Score = 372 bits (412), Expect = 5e-101 Identities = 260/293 (89%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||||| ||||||||||||||||||||||| Sbjct 569 TACTAGGTTGAATTACTATTGCGACC-CTGTCATCA-TAGGGTAAAACTAACCTGTCTCA 512 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||| || Sbjct 511 CGACGGTCTAAACCAAGCTCACGTTCCCTATTGGTGGGTGAACAATCTAACACTTGGGGA 452 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 451 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTCGCTAT 392 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 391 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTTACACCTCTAGCTT 332 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| ||| |||||| Sbjct 331 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACAGTTCGTATTC 279 >seq722151 Length=447 Score = 246 bits (272), Expect = 5e-63 Identities = 168/189 (89%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||| || |||||||||||| ||||||| |||||| |||||||||||||||| Sbjct 166 ATCCAACACTCGGTGAATTCTGCTTCACAATGATAGAAAGAGCTGACATCGAAGGATCAA 225 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 226 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCGAGTTATCCATGTGGTAACTTTT 285 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||| |||||||||| ||||||| || || ||||||||||| ||||||||||||||| | Sbjct 286 CTGACACCTCTAGCTTCAAATTCTGAAGGTCTAAAGGATCGTTAGGCCACACTTTCACAG 345 Query 285 TTTGTATTC 293 ||||||||| Sbjct 346 TTTGTATTC 354 >seq532454 Length=8848 Score = 215 bits (238), Expect = 9e-54 Identities = 154/176 (88%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 4833 GAATTCTGCTTCACAATGATAGGAATAGCCAACATCGAAGGATCAAAAAGCAACGTCGCT 4774 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| | Sbjct 4773 GTGAACGCTTGGCTGTCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCTAAC 4714 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| || | |||||||||| ||||||| |||||| |||| ||||||| Sbjct 4713 TTCAAATTCTGA-AGTCTAAAGGATCTTTAGGCCATGCTTTCAAGGTTCGTATTCA 4659 >seq241489 Length=399 Score = 188 bits (208), Expect = 1e-45 Identities = 137/159 (86%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122 ||| ||||||| |||||||| || |||| | |||||||||||| | || || |||| Sbjct 227 ACGATCTAAACTCAGCTCACATTTCCTAATGATGGGTGAACAATTCTACATTTGGTGAAT 168 Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 |||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 167 TCTGCTTCACAATGTTAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACATCACTATGA 108 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||| |||||||||||||||||||||||| ||||| Sbjct 107 ACGCTTGGTTGCCACAAGCCAGTTATCCCTGTGATAACT 69 >seq596019 Length=623 Score = 147 bits (162), Expect = 4e-33 Identities = 119/143 (83%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||| |||||||||||| |||| ||||| | ||||||||||| ||| ||| Sbjct 171 GACGGTCTAAATTCAGCTCACGTTCTCTATCAGTGGATAAACAATCCAACACTTGATGAA 230 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| || |||||||||||||||||| ||| || ||||| |||| | |||||| Sbjct 231 TTCTGCTTCACAATTATAGGAAGAGCCGACATCAAAGTAT-AAAAAACAACATTGCTATG 289 Query 182 AACGCTTGGCTGCCACAAGCCAG 204 |||| ||| ||||||||| ||| Sbjct 290 AACGTTTGATTGCCACAAGTCAG 312 >seq751263 Length=339 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/116 (77%), Gaps = 8/116 (7%) Strand=Plus/Plus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||| ||| |||| ||| |||| ||||||||||||||||| || ||| Sbjct 197 GACGGTCTAAATACAGGTCACATTCTTTATTGGTGGGTGAACAATCCAATAATTGGTGAA 256 Query 122 TTCTGCTTCGGTATGATAGGAAG--------AGCCGACATCGAAGGATCAAAAAGC 169 || |||||| ||||||||||| |||||||||| |||||| ||||||| Sbjct 257 TTATGCTTCAAAATGATAGGAAGATAGGAAAAGCCGACATCAAAGGATGAAAAAGC 312 >seq130756 Length=394 Score = 91.5 bits (100), Expect = 2e-16 Identities = 89/116 (77%), Gaps = 8/116 (7%) Strand=Plus/Minus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||| ||| |||| ||| |||| ||||||||||||||||| || ||| Sbjct 337 GACGGTCTAAATACAGGTCACATTCTTTATTGGTGGGTGAACAATCCAATAATTGGTGAA 278 Query 122 TTCTGCTTCGGTATGATAGGAAG--------AGCCGACATCGAAGGATCAAAAAGC 169 || |||||| ||||||||||| |||||||||| |||||| ||||||| Sbjct 277 TTATGCTTCAAAATGATAGGAAGATAGGAAAAGCCGACATCAAAGGATGAAAAAGC 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 847613603328