Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq664025 372 5e-101
seq722151 246 5e-63
seq532454 215 9e-54
seq241489 188 1e-45
seq596019 147 4e-33
seq751263 91.5 2e-16
seq130756 91.5 2e-16
>seq664025
Length=3750
Score = 372 bits (412), Expect = 5e-101
Identities = 260/293 (89%), Gaps = 2/293 (1%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | | ||||||| |||||||||||||||||||||||
Sbjct 569 TACTAGGTTGAATTACTATTGCGACC-CTGTCATCA-TAGGGTAAAACTAACCTGTCTCA 512
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||| ||
Sbjct 511 CGACGGTCTAAACCAAGCTCACGTTCCCTATTGGTGGGTGAACAATCTAACACTTGGGGA 452
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 451 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTCGCTAT 392
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 391 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTTACACCTCTAGCTT 332
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| ||| ||||||
Sbjct 331 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACAGTTCGTATTC 279
>seq722151
Length=447
Score = 246 bits (272), Expect = 5e-63
Identities = 168/189 (89%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
||||||| || |||||||||||| ||||||| |||||| ||||||||||||||||
Sbjct 166 ATCCAACACTCGGTGAATTCTGCTTCACAATGATAGAAAGAGCTGACATCGAAGGATCAA 225
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 226 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCGAGTTATCCATGTGGTAACTTTT 285
Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
||| |||||||||| ||||||| || || ||||||||||| ||||||||||||||| |
Sbjct 286 CTGACACCTCTAGCTTCAAATTCTGAAGGTCTAAAGGATCGTTAGGCCACACTTTCACAG 345
Query 285 TTTGTATTC 293
|||||||||
Sbjct 346 TTTGTATTC 354
>seq532454
Length=8848
Score = 215 bits (238), Expect = 9e-54
Identities = 154/176 (88%), Gaps = 1/176 (1%)
Strand=Plus/Minus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
|||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 4833 GAATTCTGCTTCACAATGATAGGAATAGCCAACATCGAAGGATCAAAAAGCAACGTCGCT 4774
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 4773 GTGAACGCTTGGCTGTCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACATCTAAC 4714
Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
||||||| || | |||||||||| ||||||| |||||| |||| |||||||
Sbjct 4713 TTCAAATTCTGA-AGTCTAAAGGATCTTTAGGCCATGCTTTCAAGGTTCGTATTCA 4659
>seq241489
Length=399
Score = 188 bits (208), Expect = 1e-45
Identities = 137/159 (86%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 63 ACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAAT 122
||| ||||||| |||||||| || |||| | |||||||||||| | || || ||||
Sbjct 227 ACGATCTAAACTCAGCTCACATTTCCTAATGATGGGTGAACAATTCTACATTTGGTGAAT 168
Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182
|||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 167 TCTGCTTCACAATGTTAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACATCACTATGA 108
Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221
|||||||| |||||||||||||||||||||||| |||||
Sbjct 107 ACGCTTGGTTGCCACAAGCCAGTTATCCCTGTGATAACT 69
>seq596019
Length=623
Score = 147 bits (162), Expect = 4e-33
Identities = 119/143 (83%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121
||||||||||| |||||||||||| |||| ||||| | ||||||||||| ||| |||
Sbjct 171 GACGGTCTAAATTCAGCTCACGTTCTCTATCAGTGGATAAACAATCCAACACTTGATGAA 230
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181
||||||||| || |||||||||||||||||| ||| || ||||| |||| | ||||||
Sbjct 231 TTCTGCTTCACAATTATAGGAAGAGCCGACATCAAAGTAT-AAAAAACAACATTGCTATG 289
Query 182 AACGCTTGGCTGCCACAAGCCAG 204
|||| ||| ||||||||| |||
Sbjct 290 AACGTTTGATTGCCACAAGTCAG 312
>seq751263
Length=339
Score = 91.5 bits (100), Expect = 2e-16
Identities = 89/116 (77%), Gaps = 8/116 (7%)
Strand=Plus/Plus
Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121
||||||||||| ||| |||| ||| |||| ||||||||||||||||| || |||
Sbjct 197 GACGGTCTAAATACAGGTCACATTCTTTATTGGTGGGTGAACAATCCAATAATTGGTGAA 256
Query 122 TTCTGCTTCGGTATGATAGGAAG--------AGCCGACATCGAAGGATCAAAAAGC 169
|| |||||| ||||||||||| |||||||||| |||||| |||||||
Sbjct 257 TTATGCTTCAAAATGATAGGAAGATAGGAAAAGCCGACATCAAAGGATGAAAAAGC 312
>seq130756
Length=394
Score = 91.5 bits (100), Expect = 2e-16
Identities = 89/116 (77%), Gaps = 8/116 (7%)
Strand=Plus/Minus
Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121
||||||||||| ||| |||| ||| |||| ||||||||||||||||| || |||
Sbjct 337 GACGGTCTAAATACAGGTCACATTCTTTATTGGTGGGTGAACAATCCAATAATTGGTGAA 278
Query 122 TTCTGCTTCGGTATGATAGGAAG--------AGCCGACATCGAAGGATCAAAAAGC 169
|| |||||| ||||||||||| |||||||||| |||||| |||||||
Sbjct 277 TTATGCTTCAAAATGATAGGAAGATAGGAAAAGCCGACATCAAAGGATGAAAAAGC 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 847613603328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |