Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq594815 104 5e-20 seq355465 100 6e-19 seq702600 93.3 8e-17 seq774645 77.0 6e-12 >seq594815 Length=7444 Score = 104 bits (114), Expect = 5e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||| ||||| Sbjct 1205 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGCAAGTC 1264 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 || |||| ||||||| |||||| || ||||| ||||| Sbjct 1265 GGACTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCG 1301 >seq355465 Length=701 Score = 100 bits (110), Expect = 6e-19 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||| |||| | |||| | ||| |||||||||| || |||| |||| ||||||| | ||| Sbjct 113 TTGGCTGCAAGACCCACCCGTCGAGCAGGGACGCAAATCGGACTTAGTGATCCGACAGTG 54 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | || ||||| |||| || ||| ||||||||||| |||||| |||||| Sbjct 53 CCGAGTGGAAGGGCCATCTCTCAACGGATAAAAGTTACCCTAGGGATA 6 >seq702600 Length=1551 Score = 93.3 bits (102), Expect = 8e-17 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||| ||| | |||| | ||| |||||||| | ||||| Sbjct 994 AGTGCAAAGGCAGAAGGGAGCTTGATTGCAAGACCCACCCGTCGAGCAGGGATGCAAGTC 1053 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||||| || ||| || ||||| || ||| ||| ||||||| ||| Sbjct 1054 GGACTTAGTGATCCAACGATGCCGAGTGGAAGGGTTGTCACTCAGTCGATAAAAATTACT 1113 Query 331 CTGGGGATA 339 || |||||| Sbjct 1114 CTAGGGATA 1122 >seq774645 Length=3367 Score = 77.0 bits (84), Expect = 6e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 258 AGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACG 317 ||||| | |||| || |||| ||||||| ||||| || ||||| ||||||||||| | Sbjct 1230 AGGGATGCAAGTTGGACTTAGTGATCCGATGGTGCCGAGTGGAAGGGCCGTCGCTCAATA 1289 Query 318 GATAAAAGCTACCCTGGGGATA 339 |||||||| ||| || |||||| Sbjct 1290 GATAAAAGTTACTCTAGGGATA 1311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 974596914688