Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq372185 201 3e-49 seq490453 185 2e-44 seq412124 165 2e-38 seq623142 149 2e-33 seq437833 141 2e-31 seq709157 129 1e-27 seq735483 114 3e-23 seq597775 86.0 2e-14 seq536401 86.0 2e-14 seq730195 77.0 8e-12 >seq372185 Length=744 Score = 201 bits (222), Expect = 3e-49 Identities = 297/406 (73%), Gaps = 16/406 (4%) Strand=Plus/Plus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| ||||||||||| |||||| ||||| | |||||| ||| Sbjct 229 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TCACCCAAGCTT- 285 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||| | || ||||||||| | || ||| | || Sbjct 286 CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCTATAAGC-AGTGACAATTGCCC 342 Query 140 ---CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 ||| |||||||||||| ||||||| |||| | ||| |||| | ||||||| Sbjct 343 TACCTACGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTG 400 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCC 254 || |||||| | | |||| | ||| ||| |||| |||| | | | | |||| Sbjct 401 CCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGACCTAGCTCA--TCCC 458 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||| || || ||||||| | ||||||||||||||| | |||||||||||| Sbjct 459 ACTGCTTGGGAGCTTATGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCA 517 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | | Sbjct 518 CCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGT 577 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | ||||| || || | |||| || | ||||||| Sbjct 578 GGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 623 >seq490453 Length=754 Score = 185 bits (204), Expect = 2e-44 Identities = 276/376 (73%), Gaps = 17/376 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| || || | Sbjct 514 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTTGTT-TC 458 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 457 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 402 Query 129 GACTAGACGCC---CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAG 183 ||| | || ||| |||||| ||||| ||||||| |||| | ||| |||| Sbjct 401 GACAATTGCCCTACCTACGAAGACTTGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAAC 343 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 | ||||| | || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 342 CAA-GCCACCGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGACCTA 284 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||||||||| || |||||||||| | ||||||||||||||| | || Sbjct 283 GCTC--CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GG 227 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||| Sbjct 226 GGTTCTTTTGACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG 167 Query 364 CCTTGGAGGATGGTCC 379 | ||| | | |||||| Sbjct 166 CATTGCAAGGTGGTCC 151 >seq412124 Length=925 Score = 165 bits (182), Expect = 2e-38 Identities = 297/417 (71%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| || || | || |||||| |||||||||||| |||||| ||||| | Sbjct 190 CCACAACTCAT-CCACTGA-TTCTTCAACATTAGTCGGTTCGGACCTCCACTTAGTT-TC 246 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || || || || | || Sbjct 247 ACCCAAGCTT-CATCCTGATCAT-GGATAGATCACCCAGGTT-CGAGTTCATAAGC-AGT 302 Query 129 GACTAGACGCC---CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAG 183 ||| | || ||| |||||||||||| | ||||| ||| || ||| |||| Sbjct 303 GACAATTGCCCTACCTACGAAGACTCGCTTT-CACTACGGCTCTGATAGGTTCC-TTAAC 360 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 | ||||||| || ||||| | | |||| | ||| ||| ||| | || | | | Sbjct 361 CAA-GCCACTGCCTATGAGTCGTCGGCTCATTCTTCAACAGGCACGGGGGCAGAGACCTA 419 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | ||||||||||||| || |||||||||| | |||||||||||||| | || Sbjct 420 GCTC--CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCTGATG-GG 476 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 || ||||||| || |||||||| ||||||| ||| |||||||||| ||| ||||||||| Sbjct 477 GGCTCTTTTCACCCTTCCCTCATGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAG 536 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 537 CCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 593 >seq623142 Length=5574 Score = 149 bits (164), Expect = 2e-33 Identities = 233/320 (73%), Gaps = 15/320 (5%) Strand=Plus/Plus Query 54 CTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCG 113 ||||| ||||| | |||||| ||| || |||| ||| ||||||||| || | || || Sbjct 4712 CTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCTAGGTT-CG 4767 Query 114 GGTCTATTTCCCAGCGACTAGACGCC---CTAGTAAGACTCGCTTTTCGCTACGCCTCCC 170 |||| || | || ||| | || ||| ||||||| |||| ||||||| |||| Sbjct 4768 GGTCCATAAGC-AGTGACAATTGCCCTACCTACGAAGACTCACTTT-CGCTACGGCTCCG 4825 Query 171 CTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTAC 228 | ||| |||| | ||||||| || |||||| | | |||| | ||| ||| || Sbjct 4826 GTGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCAC 4884 Query 229 GCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTT 288 || |||| | | | | ||||||||| ||| || |||| ||||| | | ||||| Sbjct 4885 GCGGTCAGAGACCTAGCTC--CTCCCACTGATTGGGAGCTTACGATTTCATGTTTTATTT 4942 Query 289 CACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 348 |||||||| | |||||||||||| || |||||||||||||||| ||| |||||||||| Sbjct 4943 CACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCA 5001 Query 349 GTCAGTAGTATTTAGCCTTG 368 ||| |||||||||||||| Sbjct 5002 CCCAGGAGTATTTAGCCTTG 5021 >seq437833 Length=6425 Score = 141 bits (156), Expect = 2e-31 Identities = 206/284 (73%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 139 CCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAA 196 |||| |||||| ||||| | ||||| |||| || ||| |||| | ||||||| Sbjct 6387 CCTACGAAGACTTGCTTT-CACTACGGCTCCGATAGGTTCC-TTAACCAA-GCCACTGCC 6331 Query 197 AATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCAC 256 || ||||| | | |||| | ||| ||| ||| |||| | | | | ||||||| Sbjct 6330 TATGAGTCGTCGGCTCATTCTTCAACAGGCACGTGGTCAGAGACCTAGCTC--CTCCCAC 6273 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||| || |||||||||| | ||||||||||||||| | |||| ||||||| || Sbjct 6272 TGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGCTCTTTTCACC 6214 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||||||| ||||||| ||| |||||||||| ||| |||||||||||||| | | ||| Sbjct 6213 CTTCCCTCATGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGG 6154 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | ||||| || || | |||| || | ||||||| Sbjct 6153 TCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 6110 >seq709157 Length=2746 Score = 129 bits (142), Expect = 1e-27 Identities = 137/180 (76%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | | Sbjct 1219 GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAATAGGCACGCGGTCAGAGACCTAGCTC 1278 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 ||||||||||||| || |||||||||| | ||||||||||||| |||||| Sbjct 1279 --CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCTG-----GGGGTT 1331 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| || |||||||||||||||| ||| ||||| |||| ||| ||||||||||||| Sbjct 1332 CTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCAGTCACCCAGGAGTATTTAGCCTT 1391 >seq735483 Length=763 Score = 114 bits (126), Expect = 3e-23 Identities = 104/130 (80%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| |||| | || ||||||| | |||||||||||||| | |||||||| Sbjct 455 CTCCCACTACTTGGGAGTTTATGGTTTCATGTTCTATTTCACTCCCTGATA-GGGGTTCT 513 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || |||||||| | ||||| ||||||||||||| ||| |||||||||||||| Sbjct 514 TTTCACCCTTCCCTCAAGATACTACTTCACTATCGGTCGCCCAGAAGTATTTAGCCTTGC 573 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 574 AAGGTGGTCC 583 >seq597775 Length=3284 Score = 86.0 bits (94), Expect = 2e-14 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||||||||| || ||| ||||| | ||||||||||||| | | ||||||||||| Sbjct 2969 CCACTGCTTGGGAGCTCACGATTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCTTTT 3027 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC 351 | || |||||||||||||||| ||| ||||| | || || Sbjct 3028 CACCATTCCCTCACGGTACTATTTCGCTATCTGACACTC 3066 >seq536401 Length=999 Score = 86.0 bits (94), Expect = 2e-14 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 288 TCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC 347 ||||||||| | ||| |||||||| || |||||||||||||||| ||| |||||| | Sbjct 999 TCACTCCCCGATG-GGGATTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGATT 941 Query 348 AGTCAGTAGTATTTAGCCTTGGAGGATGGTCC 379 | ||| |||||||||||||| | | |||||| Sbjct 940 ACCCAGGAGTATTTAGCCTTGCAAGGTGGTCC 909 >seq730195 Length=1322 Score = 77.0 bits (84), Expect = 8e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||||||||||| ||| |||||||||| ||| |||||||||||||| | | | Sbjct 337 CCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGT 396 Query 375 GGTCC 379 ||||| Sbjct 397 GGTCC 401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1231738120192