Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq456161 197 3e-48 seq559850 161 2e-37 seq533196 159 7e-37 seq765720 154 3e-35 seq609128 129 1e-27 seq692555 122 2e-25 seq57984 122 2e-25 seq400464 114 3e-23 seq324309 113 9e-23 seq106765 105 1e-20 seq737182 96.9 7e-18 seq239742 96.9 7e-18 seq766578 95.1 2e-17 seq74662 93.3 8e-17 seq360260 91.5 3e-16 seq97894 87.8 4e-15 seq50221 82.4 2e-13 seq581694 80.6 5e-13 seq428776 77.0 6e-12 seq509365 75.2 2e-11 >seq456161 Length=1433 Score = 197 bits (218), Expect = 3e-48 Identities = 229/304 (75%), Gaps = 15/304 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 407 GGCATTGCTCCGTCAGGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 466 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||| ||||||| ||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 467 GAGTCTGGGTCGTGTCTTAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 526 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| ||| ||||| || | Sbjct 527 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAAACGCAAGCCCCTCCTCGG 586 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| || ||| || | ||| ||||| | | || | ||||||||| || Sbjct 587 GCG---GATTTTT--TC-----CTTTTGC--TCCTCAGCC--TACGGGGTATTAGCAGTC 632 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| | ||| |||| ||| || || ||||| || | | |||||||||||||| | Sbjct 633 GTTTCCAGATGTTGTTCCCCTCCCAAGGGTAGGTT-CTTATGCGTTACTCACCCGTCTGT 691 Query 301 CACT 304 |||| Sbjct 692 CACT 695 >seq559850 Length=11969 Score = 161 bits (178), Expect = 2e-37 Identities = 119/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 37 ATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTT 96 || |||||||||||||||||||||||||||||||||||||||||||||| |||||| | | Sbjct 4902 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 4961 Query 97 CAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCT 156 || |||||| | || ||||| |||| ||| |||||| |||||| ||||||||||| || Sbjct 4962 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 5021 Query 157 AATCGGCCGCGAGCCCATC 175 |||| | ||| ||||| || Sbjct 5022 AATCAGACGCAAGCCCCTC 5040 >seq533196 Length=6825 Score = 159 bits (176), Expect = 7e-37 Identities = 115/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40 CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAA 99 |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| Sbjct 2469 CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCAT 2410 Query 100 CCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| | || ||||| |||| ||| |||||| |||||| ||||||||||| ||||| Sbjct 2409 CCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAAT 2350 Query 160 CGGCCGCGAGCCC 172 | | ||| ||||| Sbjct 2349 CAGACGCAAGCCC 2337 >seq765720 Length=1578 Score = 154 bits (170), Expect = 3e-35 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| |||||| | || || |||||||||||||||| |||||||||||||| Sbjct 347 TCAGGCTTTCGCCCATTAAGGAAAATTCCCCACTGCTGCCTCCTATAGGAGTCTGGGCCA 406 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||| | ||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 407 TGTCTCAGTCCTGGTATGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 466 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTT 177 |||||| |||||||||||| |||||| | ||| ||||| |||| Sbjct 467 AAGCTATTGTCTCACCAACTAGCTAATCAGACGCAAGCCCCTCTT 511 >seq609128 Length=9556 Score = 129 bits (142), Expect = 1e-27 Identities = 135/176 (77%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | |||| ||| ||||||| | || || ||||| |||||||||| |||| Sbjct 7353 GGCATTGCTCCGTCAGACTTTTGCCCATTGAGGAAAATTCCCCATTGCTGCCTCCTGTAG 7412 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGC-TACCGA 119 |||| |||| ||||||||||||| | |||||| | ||| |||||| || | ||| || Sbjct 7413 GAGTTTGGGTCGTGTCTCAGTCCTACTGTGGCTGATCATCCTCTCGTACCAACTTACTGA 7472 Query 120 TCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || ||| |||||| |||||| ||||| ||||| |||||| | | | ||||| || Sbjct 7473 TCATCGCCTTGGTATGCTATTGCCTCACAAACTAGCTAATCAGACTCAAGCCCCTC 7528 >seq692555 Length=413 Score = 122 bits (134), Expect = 2e-25 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| |||||||| || || ||||||||||||||||||||| Sbjct 171 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCCCACTGCTGCCTCCCGTAG 230 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 |||||||||||||| |||||| |||||||||| | ||| |||||| Sbjct 231 GAGTCTGGGCCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTC 275 >seq57984 Length=346 Score = 122 bits (134), Expect = 2e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| |||||| || || |||| ||||||||| ||||| Sbjct 198 GGCATTGCTTCATCAGGCTTTCGTCCATTGCCGAAAATTCCCCGTTGCTGCCTCTCGTAG 139 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 || |||||||| ||| ||| ||||||| | | | ||| ||||||| || ||||| ||| Sbjct 138 GACTCTGGGCCATGTTTCAATCCCAATATAACTGATCATCCTCTCAAACCAGCTACTGAT 79 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 | ||| ||| || | |||| ||||||||||| |||||| Sbjct 78 CATCGCCTTAGTAAGTTATTGCCTCACCAACTAGCTAATC 39 >seq400464 Length=1501 Score = 114 bits (126), Expect = 3e-23 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | |||| |||| ||||||| | || || ||||| |||||||||| |||||||||| Sbjct 520 GCTCCGTCAGATTTTCGCCCATTGCGGAAAATTCCCCATTGCTGCCTCCTGTAGGAGTCT 461 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 | | | ||||||| ||||| |||||| | ||| || ||| | ||||| ||| || Sbjct 460 GCGACTTGTCTCAATCCCAGTGTGGCTGATCATCCGCTCGAATCAGCTACTAATCCTCAC 401 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| ||||| ||||||||||| ||||| Sbjct 400 CTTGGTAATCTATTGCCTCACCAACTAGCTAAT 368 >seq324309 Length=907 Score = 113 bits (124), Expect = 9e-23 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| |||||||| || || |||||||||| |||||||||| Sbjct 803 GGCATTGCTCCGTCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTACCTCCCGTAG 744 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||||||| |||| |||||| |||||||||| | ||| |||||| Sbjct 743 GAGTCTGGGTCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTC 699 >seq106765 Length=629 Score = 105 bits (116), Expect = 1e-20 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 16 GGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGT 75 || |||| |||||| || || ||||||||||||||| |||||| |||||| |||| Sbjct 289 GGCTTTCGTCCATTGCAGAAAATTTCCCACTGCTGCCTCCAGTAGGAATCTGGGTTGTGT 348 Query 76 CTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGG 135 |||||| || ||| || | ||| | |||| || ||||| ||| | | |||||| | Sbjct 349 CTCAGT-CCTGTGTAGCTGATCATCTTCTCGAACCAGCTACTAATCATTGCCTTGGTAAG 407 Query 136 CTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||||| | |||||||||| |||||| | || ||||| || || Sbjct 408 CTATTGTATCACCAACTAGCTAATCAGACGTAAGCCCCTCCTT 450 >seq737182 Length=910 Score = 96.9 bits (106), Expect = 7e-18 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 ||| |||||| |||| |||||||| ||| || |||||||||||| ||| |||||||| Sbjct 560 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCACGGGAGTCTG 619 Query 68 GGCCGTGTCTCAGTCCCAATGTG 90 |||||||||||||||||| |||| Sbjct 620 GGCCGTGTCTCAGTCCCAGTGTG 642 >seq239742 Length=404 Score = 96.9 bits (106), Expect = 7e-18 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 ||| |||||| |||| |||||||| ||| || |||||||||||| |||| |||||||| Sbjct 250 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCGCGGGAGTCTG 191 Query 68 GGCCGTGTCTCAGTCCCAATGTG 90 |||||||||| ||||||| |||| Sbjct 190 GGCCGTGTCTAAGTCCCAGTGTG 168 >seq766578 Length=9890 Score = 95.1 bits (104), Expect = 2e-17 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||||||||||| |||||| ||| |||||| | || ||||| |||| ||| |||| Sbjct 2896 CGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTGATCATCGCCTTG 2955 Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || || ||| ||||||||||| |||||| | ||| ||||| || Sbjct 2956 GTAAGCGATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 3000 >seq74662 Length=794 Score = 93.3 bits (102), Expect = 8e-17 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| || | || | || || ||||| |||||||||| || | Sbjct 557 GGCATTGCTCCATCAGGCTTTCGCCTACTGCGGAAAATTCCCCATTGCTGCCTCC-GT-G 614 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 615 GAGGCTGGGCCGTGTCTCAGTCCCAATGTGGCTAATCATTCTCTC 659 >seq360260 Length=2664 Score = 91.5 bits (100), Expect = 3e-16 Identities = 144/204 (71%), Gaps = 17/204 (8%) Strand=Plus/Plus Query 102 TCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCG 161 |||| | || ||||| |||| ||| |||||| |||||| ||||||||||| |||||| Sbjct 1655 TCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCA 1714 Query 162 GCCGCGAGCCCATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGAC 220 | | | ||||| || | ||| || || || ||| ||||| | | Sbjct 1715 GACTCAAGCCCCTCATCGGGCGGATTCCTCCTTT------------TGCT-TCCTCAGCC 1761 Query 221 ATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCA 280 || ||||||||| |||||||| ||| |||| ||| || |||||||| || | Sbjct 1762 --TACAGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTA 1818 Query 281 CGTGTTACTCACCCGTCCGCCACT 304 |||||||||||||||||||||||| Sbjct 1819 CGTGTTACTCACCCGTCCGCCACT 1842 >seq97894 Length=709 Score = 87.8 bits (96), Expect = 4e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 47 GCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCA 106 |||||||||||||||||| || |||||||||||||||||||||||| ||| |||||| Sbjct 559 GCTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAGTCCCAATGTGGCTAATCATCCTCTCG 618 Query 107 GTCCGGCTACC 117 | || |||||| Sbjct 619 GACCAGCTACC 629 >seq50221 Length=719 Score = 82.4 bits (90), Expect = 2e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 48 CTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAG 107 ||||||||||||||||| || ||||||||||| |||||||||||| ||| |||||| | Sbjct 436 CTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAATCCCAATGTGGCTAATCATCCTCTCGG 495 Query 108 TCCGGCTACC 117 || |||||| Sbjct 496 ACCAGCTACC 505 >seq581694 Length=7463 Score = 80.6 bits (88), Expect = 5e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || |||||||||||||||| |||||||||| Sbjct 3825 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCT 3884 Query 67 GGGCCGTGT 75 ||| ||||| Sbjct 3885 GGGGCGTGT 3893 >seq428776 Length=928 Score = 77.0 bits (84), Expect = 6e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 148 GCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 207 Query 67 GG 68 || Sbjct 208 GG 209 >seq509365 Length=1137 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 79 || || |||||||||||||||||||||||||||||||||||||||| Sbjct 861 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 990469828608