Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq616751 185 2e-44 seq793521 163 7e-38 seq596314 134 3e-29 seq205610 91.5 3e-16 seq769187 86.0 1e-14 seq539513 78.8 2e-12 >seq616751 Length=4941 Score = 185 bits (204), Expect = 2e-44 Identities = 159/194 (82%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || || Sbjct 3093 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 3150 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 3151 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 3210 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 | | | | || |||||| ||||||| | || |||||||||||||||| ||||| ||| Sbjct 3211 TGTACCCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGG 3270 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 3271 CTGTTTCCCTCTCG 3284 >seq793521 Length=3834 Score = 163 bits (180), Expect = 7e-38 Identities = 148/184 (80%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 |||||| |||| | ||| |||| |||||| | ||| |||| || | |||| || || Sbjct 884 CCACAGTTTCGACAGATCGCTTA-GCCCCGTT-CATCTTCGGTGCAAGAGCACTCGATCA 941 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||| |||||||||||||||||||| |||||||||| |||| |||||||||| ||||| Sbjct 942 GTGAGTTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCCTGGCTGTCTC 1001 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| | || |||||||||||||||| ||||| ||| Sbjct 1002 TGCACCCCTACCTCCTTTATCACTGAGCAATCATTTAGGGGCCTTAGCTGGTGATCCGGG 1061 Query 387 CTGT 390 |||| Sbjct 1062 CTGT 1065 >seq596314 Length=723 Score = 134 bits (148), Expect = 3e-29 Identities = 144/190 (76%), Gaps = 14/190 (7%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||| ||| ||| |||| |||||| | ||| ||||||| | |||| || || Sbjct 450 CCACAGCTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCACTCGATCA 507 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||| |||||||||| |||| || ||||||| | ||| Sbjct 508 GTGAGCTATTACGCATTCTTTCAAGGGTGGC------------AAACTCCTGGCTATCTT 555 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | ||||| ||| |||| ||| | || |||||||||||||||| ||||| ||| Sbjct 556 TGCACCCCTACATCATTTATCACTAAGTGATCATTTAGGGGCCTTAGCTGGTGATCCGGG 615 Query 387 CTGTTTCCCT 396 |||||||||| Sbjct 616 CTGTTTCCCT 625 >seq205610 Length=312 Score = 91.5 bits (100), Expect = 3e-16 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269 |||||||||| ||| |||| |||||| | ||| ||||||| | | || || ||||| Sbjct 163 CAGCTTCGGCAGATTGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTG 220 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTC 303 ||||||||||||||||||||||| |||||||||| Sbjct 221 AGCTATTACGCACTCTTTCAAGGGTGGCTGCTTC 254 >seq769187 Length=967 Score = 86.0 bits (94), Expect = 1e-14 Identities = 92/118 (78%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 208 CACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAG 267 |||||||||||| ||| |||| || ||| | | | || | || | || | || ||| Sbjct 147 CACAGCTTCGGCAGATCGCTTA-GCTCCGTT-CGTCTTCAGTGCAAGAGCATTCGATCAG 90 Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||| |||||||||||||||||||| | |||||||| | || |||||||| ||||||| Sbjct 89 TGAGGTATTACGCACTCTTTCAAGGGT-GCTGCTTCTAGGCAAACCTCCTAGTTGTCT 33 >seq539513 Length=2092 Score = 78.8 bits (86), Expect = 2e-12 Identities = 57/66 (86%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || |||||| |||||||||| | |||| |||||||| |||||||||||| |||||||| Sbjct 1040 CTAGACCAGCGAGCTATTACACTTTCTTCAAAGGATGGGTGCTTCCAAGCCCACCTCCTG 981 Query 319 GTTGTC 324 |||||| Sbjct 980 GTTGTC 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1168246464512