Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq616751 185 2e-44
seq793521 163 7e-38
seq596314 134 3e-29
seq205610 91.5 3e-16
seq769187 86.0 1e-14
seq539513 78.8 2e-12
>seq616751
Length=4941
Score = 185 bits (204), Expect = 2e-44
Identities = 159/194 (82%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || ||
Sbjct 3093 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 3150
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||||||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 3151 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTC 3210
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
| | | | || |||||| ||||||| | || |||||||||||||||| ||||| |||
Sbjct 3211 TGTACCCCTACCTCCTTTATCACTGAGCGATCATTTAGGGGCCTTAGCTGGTGATCCGGG 3270
Query 387 CTGTTTCCCTCTCG 400
||||||||||||||
Sbjct 3271 CTGTTTCCCTCTCG 3284
>seq793521
Length=3834
Score = 163 bits (180), Expect = 7e-38
Identities = 148/184 (80%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
|||||| |||| | ||| |||| |||||| | ||| |||| || | |||| || ||
Sbjct 884 CCACAGTTTCGACAGATCGCTTA-GCCCCGTT-CATCTTCGGTGCAAGAGCACTCGATCA 941
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||| |||||||||||||||||||| |||||||||| |||| |||||||||| |||||
Sbjct 942 GTGAGTTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCAAACCTCCTGGCTGTCTC 1001
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| ||||||| | || |||||||||||||||| ||||| |||
Sbjct 1002 TGCACCCCTACCTCCTTTATCACTGAGCAATCATTTAGGGGCCTTAGCTGGTGATCCGGG 1061
Query 387 CTGT 390
||||
Sbjct 1062 CTGT 1065
>seq596314
Length=723
Score = 134 bits (148), Expect = 3e-29
Identities = 144/190 (76%), Gaps = 14/190 (7%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||| ||| ||| |||| |||||| | ||| ||||||| | |||| || ||
Sbjct 450 CCACAGCTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCACTCGATCA 507
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||||||| |||||||||| |||| || ||||||| | |||
Sbjct 508 GTGAGCTATTACGCATTCTTTCAAGGGTGGC------------AAACTCCTGGCTATCTT 555
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | ||||| ||| |||| ||| | || |||||||||||||||| ||||| |||
Sbjct 556 TGCACCCCTACATCATTTATCACTAAGTGATCATTTAGGGGCCTTAGCTGGTGATCCGGG 615
Query 387 CTGTTTCCCT 396
||||||||||
Sbjct 616 CTGTTTCCCT 625
>seq205610
Length=312
Score = 91.5 bits (100), Expect = 3e-16
Identities = 78/94 (83%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269
|||||||||| ||| |||| |||||| | ||| ||||||| | | || || |||||
Sbjct 163 CAGCTTCGGCAGATTGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTG 220
Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTC 303
||||||||||||||||||||||| ||||||||||
Sbjct 221 AGCTATTACGCACTCTTTCAAGGGTGGCTGCTTC 254
>seq769187
Length=967
Score = 86.0 bits (94), Expect = 1e-14
Identities = 92/118 (78%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 208 CACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAG 267
|||||||||||| ||| |||| || ||| | | | || | || | || | || |||
Sbjct 147 CACAGCTTCGGCAGATCGCTTA-GCTCCGTT-CGTCTTCAGTGCAAGAGCATTCGATCAG 90
Query 268 TGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||| |||||||||||||||||||| | |||||||| | || |||||||| |||||||
Sbjct 89 TGAGGTATTACGCACTCTTTCAAGGGT-GCTGCTTCTAGGCAAACCTCCTAGTTGTCT 33
>seq539513
Length=2092
Score = 78.8 bits (86), Expect = 2e-12
Identities = 57/66 (86%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| |||||| |||||||||| | |||| |||||||| |||||||||||| ||||||||
Sbjct 1040 CTAGACCAGCGAGCTATTACACTTTCTTCAAAGGATGGGTGCTTCCAAGCCCACCTCCTG 981
Query 319 GTTGTC 324
||||||
Sbjct 980 GTTGTC 975
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1168246464512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |