Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq609128 120 3e-25 seq541996 102 7e-20 seq177305 86.0 5e-15 seq510661 80.6 2e-13 >seq609128 Length=9556 Score = 120 bits (132), Expect = 3e-25 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| ||||| | || ||| | ||| | ||| |||| ||||||| ||||| || Sbjct 6465 CGAGTTGCAGCCTACACTTCGAACTGAGGATG-AGTTTTTGGGGTTAGCTCACCCTCACG 6523 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 6524 GGATTGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 6583 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCA 160 ||| ||||||| ||||||| ||||||||||||| || ||| Sbjct 6584 TGATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCA 6623 >seq541996 Length=990 Score = 102 bits (112), Expect = 7e-20 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 39 CTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGT 98 ||||| ||||||| |||||||||| | ||| |||| ||| |||||||| |||||| Sbjct 861 CTGGG-TTAGCTCACCCTCGCGGGATCGCGACCCTTTGTTCCGGCCATTGTAGCACGTGT 803 Query 99 GAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGT 158 | || | |||||||| ||||| || |||||||||||| ||||||||||||| || | Sbjct 802 GTCGCTCAGGGCATAAGGGGCATGATGAATTGACGTCATCCTCACCTTCCTCCGGCTTAT 743 Query 159 CAC 161 ||| Sbjct 742 CAC 740 >seq177305 Length=404 Score = 86.0 bits (94), Expect = 5e-15 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| | |||||| ||| | | ||||| || ||| || ||| | | Sbjct 205 CGAGTTGCAGAGAATAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCGTAGCCTTACAG 147 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||| ||||||| |||| |||||||||||||| Sbjct 146 CCTTGCTTCCCATTGTAATTGTCATTGTTGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 87 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTC 150 | ||||||||| ||||||||||||||||| Sbjct 86 GCGGACTTGACCTCATCCCCACCTTCCTC 58 >seq510661 Length=1401 Score = 80.6 bits (88), Expect = 2e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||||| ||||| ||||||||||||||| || Sbjct 230 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 289 Query 143 CCTTCCTCCGGTTTGTCAC 161 |||||||| || || |||| Sbjct 290 CCTTCCTCTGGCTTATCAC 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412799019360