Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq428777 122 1e-25 seq456161 111 3e-22 seq609128 84.2 4e-14 >seq428777 Length=1304 Score = 122 bits (134), Expect = 1e-25 Identities = 199/283 (70%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || || ||| |||||||| | Sbjct 973 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTTGCCGTTGGTGTTCTTT 1032 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 1033 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 1092 Query 126 AAAAACAGTTTCAA--ATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 | |||| | || | | | | |||||||||| | ||| || | ||||| Sbjct 1093 CTTGGTATTTTCCACCAT-CTGTCCA-GGGTTGAGCCATGGGATTTGACGGCGGACTTAA 1150 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || |||||| | |||||| |||||| | |||||||| ||| ||| ||| || | Sbjct 1151 AAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAGCGCATGCATCCTTTGTCT 1210 Query 244 TACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 || ||||||||||||||| ||||||| | ||||||||| || Sbjct 1211 TATCGCGGCTGCTGGCACAGAGTTAGCTGATGCTTATTCCCCA 1253 >seq456161 Length=1433 Score = 111 bits (122), Expect = 3e-22 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | ||||| || |||||| |||||||| | Sbjct 61 GCTTTCGTCTCTCAGTGTCAGTGTCGGCGCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 120 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| ||||||||| || ||| | |||||| || | || | | |||| || Sbjct 121 CTGATCTCTACACATTTCACCACTCCACCGGAAATTCCCTCTGTCCCTACCGTACTCCAG 180 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 || ||| | ||| | |||||||||| | ||| || | ||||| Sbjct 181 CTTGGTAGCTTCCACTGCCTGTCCAAGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 240 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || ||||| | |||||| |||||| | ||| |||| ||||||| ||| || ||| Sbjct 241 AGCCAACTACAGACGCTTTACGCCCAATCATTCCAGATATCGCTTGCATCCTCTGTCTTA 300 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||||| ||||||| ||||||| | ||||||||| || Sbjct 301 CCGCGGCTACTGGCACAGAGTTAGCTGATGCTTATTCCCCA 341 >seq609128 Length=9556 Score = 84.2 bits (92), Expect = 4e-14 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 191 CCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCG 250 |||||| | ||| ||||||||| | || ||||||||||||| ||| || |||| || Sbjct 7192 CCTACAGACGCTTGACACCCAATCATTCTGGATAACGCTTGCATCCTCTGTCTTACTGCA 7251 Query 251 GCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||||||||| |||||| || ||||||||| || Sbjct 7252 GCTGCTGGCACAGAGTTAGTCGATGCTTATTCCCCA 7287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 822422661648