Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq361836 192 9e-47 seq372444 156 7e-36 seq103253 118 2e-24 seq73723 118 2e-24 seq702600 116 6e-24 seq335868 114 2e-23 seq194744 105 1e-20 seq757452 100 4e-19 seq757451 100 4e-19 seq325435 89.7 8e-16 seq100701 77.0 5e-12 >seq361836 Length=1893 Score = 192 bits (212), Expect = 9e-47 Identities = 148/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 100 GTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACG 159 |||| ||||||||||||||||||| ||| | |||| |||| || |||||||| || Sbjct 363 GTCCTTCCCGGTCCTCTCGTACTAGGGAAAAGTCCTGTCAATGCTCTAACGCCCACACCG 304 Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||| ||||||||||||||| ||||| ||||||||| |||| ||| || ||||||||||| Sbjct 303 GATATGGACCGAACTGTCTCACGACGGTCTGAACCCTGCTCACGTACCGCTTTAATGGGC 244 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||||||| || |||| |||||||||| | || |||||||||||| Sbjct 243 TAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 188 >seq372444 Length=16487 Score = 156 bits (172), Expect = 7e-36 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 91 CAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACG 150 ||||||| |||| |||||| |||||||||||| ||| || ||||||||| || | | Sbjct 2671 CAGAGGTGCGTCCTTCCCGGCCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAATG 2730 Query 151 CCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCT 210 ||||| ||||| ||||||| ||||||| ||||||||| |||| ||||| | | || || Sbjct 2731 CCCACATCGGATTTGGACCGACCTGTCTCACGACGTTCTTAACCTAGCTCACTTACCGCT 2790 Query 211 TTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||| |||||||||| |||||||||||| || |||| ||||| ||| Sbjct 2791 TTATTGGGCGAACAACCCAACCCTTGGAACATACTAGAGCCCTAGG 2836 >seq103253 Length=522 Score = 118 bits (130), Expect = 2e-24 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 92 AGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGC 151 |||||| ||| ||||||||||||||||||| | || ||||||||| || |||| Sbjct 357 AGAGGTGCGTCTTTCCCGGTCCTCTCGTACTAGATAAAGGTCCTCTCAATGCTCTAACGC 298 Query 152 CCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTT 211 |||| || ||| |||||||| ||| || |||| || |||||| ||||| ||| || ||| Sbjct 297 CCACACCGAATATGGACCGAATTGTATCACGACATTTTGAACCTAGCTCACGTACCGCTT 238 Query 212 TAATGGGCGAACAGCCCA 229 |||| |||||||| |||| Sbjct 237 TAATAGGCGAACAACCCA 220 >seq73723 Length=538 Score = 118 bits (130), Expect = 2e-24 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 92 AGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGC 151 |||||| ||| ||||||||||||||||||| | || ||||||||| || |||| Sbjct 275 AGAGGTACGTCTTTCCCGGTCCTCTCGTACTAGATAAAGGTCCTCTCAATGCTCTAACGC 216 Query 152 CCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTT 211 |||| || ||| |||||||| ||| || |||| || |||||| ||||| ||| || ||| Sbjct 215 CCACACCGAATATGGACCGAATTGTATCCCGACATTTTGAACCTAGCTCACGTACCACTT 156 Query 212 TAATGGGCGAACAGCCCAAC 231 |||| ||||| || |||||| Sbjct 155 TAATAGGCGAGCAACCCAAC 136 >seq702600 Length=1551 Score = 116 bits (128), Expect = 6e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 159 GGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGG 218 ||||| ||| |||| |||||| |||||||||||||||||||| | | || |||||||| | Sbjct 1281 GGATATGGATCGAATTGTCTCACGACGTTCTGAACCCAGCTCACATACCGCTTTAATGAG 1222 Query 219 CGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||| ||||| |||||| || |||| || ||||||| | || ||||| |||||| Sbjct 1221 TGAACAACCCAAACCTTGGAACATACTACAACCCCAGGTGGCGAAGAGCCAACATCG 1165 >seq335868 Length=854 Score = 114 bits (126), Expect = 2e-23 Identities = 81/93 (87%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 ||||||| |||||||||| ||| || ||||||||||||||||| ||||||||||| || | Sbjct 191 ACGTTCTAAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGGCCAACCCTTGGAACAT 250 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 251 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 283 >seq194744 Length=391 Score = 105 bits (116), Expect = 1e-20 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 ||||| | || |||||||| ||| || | ||||||| || |||||||| |||| Sbjct 240 TCCCGATACTTTCGTACTATGGAAAGATTCTCTCAATGCTCTAACGCCCACATTGGATGT 299 Query 165 GGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACA 224 | || ||| |||||| | || || |||||||| ||| ||| | ||||||||||||||| Sbjct 300 GAACTGAATTGTCTCACAACATTTTGAACCCAACTCACGTACTACTTTAATGGGCGAACG 359 Query 225 GCCCAACCCTTGGGAC 240 ||||||||||||| || Sbjct 360 GCCCAACCCTTGGAAC 375 >seq757452 Length=516 Score = 100 bits (110), Expect = 4e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| ||||||| || |||| ||||||||||||||||||| | | | |||||||| Sbjct 183 AACTGGTACACCAGATGTGCGTCCTTCCCGGTCCTCTCGTACTAGGAAAAAGTCCTCTCA 242 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | || |||||||| |||||| ||||||||||||||| || Sbjct 243 ATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 285 >seq757451 Length=362 Score = 100 bits (110), Expect = 4e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 |||| || ||||| |||| |||| ||||||||||||||||||| ||| || |||||||| Sbjct 198 AACTAGTACACCAAAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCA 257 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | || |||||||| |||||| |||||||||||| || || Sbjct 258 ATGCTCTAACGCCCACACCGGATATGGACCGAACTGTGTCACG 300 >seq325435 Length=585 Score = 89.7 bits (98), Expect = 8e-16 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 85 GTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTT 144 || |||||||||| |||| ||||||||||||||||||| |||||| ||||||||| | Sbjct 499 GTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGACAGGTCCTCTCAATGCT 558 Query 145 CCTACGCCCACGACGGATAGGGACCGA 171 |||||||| |||||| ||||||| Sbjct 559 TTAACGCCCACACCGGATATGGACCGA 585 >seq100701 Length=722 Score = 77.0 bits (84), Expect = 5e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 214 ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACAT 273 |||||||| ||||||||||||||| || |||| |||||||||| | || |||||||||| Sbjct 355 ATGGGCGAGCAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACAT 414 Query 274 CG 275 || Sbjct 415 CG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774792005568