Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq456161 221 3e-55 seq559850 161 2e-37 seq609128 159 8e-37 seq533196 159 8e-37 seq692555 152 1e-34 seq765720 149 2e-33 seq324309 140 8e-31 seq57984 138 3e-30 seq400464 131 4e-28 seq74662 116 9e-24 seq106765 109 1e-21 seq428776 102 2e-19 seq766578 100 7e-19 seq737182 100 7e-19 seq239742 100 7e-19 seq581694 98.7 2e-18 seq97894 89.7 1e-15 seq50221 82.4 2e-13 seq734306 78.8 2e-12 seq493993 78.8 2e-12 seq509365 75.2 3e-11 >seq456161 Length=1433 Score = 221 bits (244), Expect = 3e-55 Identities = 295/410 (72%), Gaps = 29/410 (7%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||| ||| | | |||||||||| ||| | |||||||| | |||||| Sbjct 376 TTCACGACCCGTGGGCCCTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCACCCATT 435 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| ||||||| ||| ||||||| Sbjct 436 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCGTGTCTTAGTCCCAGTGT 495 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 496 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 555 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| | | | || | | ||| |||| Sbjct 556 ACTAGCTAATCAAACGCAAGCCCCTCC--TCGGG-------CGGATTTTTTCCT-TTTGC 605 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| ||||||||| ||| | ||||||| || | Sbjct 606 TCCTCAGCC--TACGGGGTATTAGCAGTCGTTTCCAGATGTTGTTCCCCTCCCAAGGGTA 663 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | ||||||||||||| | |||| ||| || || Sbjct 664 GGTTCTTATGCGTTACTCACCCGTCTGTCACT------GGAAACA-----------CCAT 706 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||| ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 707 TTCCCGTCCGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCATCCTGAG 756 >seq559850 Length=11969 Score = 161 bits (178), Expect = 2e-37 Identities = 110/124 (89%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| | Sbjct 4902 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 4961 Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191 ||||||||| ||||||||| |||| |||||| ||| || ||| || | |||||||||| Sbjct 4962 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 5021 Query 192 AATC 195 |||| Sbjct 5022 AATC 5025 >seq609128 Length=9556 Score = 159 bits (176), Expect = 8e-37 Identities = 288/414 (70%), Gaps = 34/414 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||| ||| | | |||||||||| ||| | |||| ||| ||||||| Sbjct 7322 TTCACGACCCGTGGGCCCTCTACCTCCACGCGGCATTGCTCCGTCAGACTTTTGCCCATT 7381 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| |||||||||| |||||||| ||| ||||||||||| | | ||| Sbjct 7382 GAGGAAAATTCCCCATTGCTGCCTCCTGTAGGAGTTTGGGTCGTGTCTCAGTCCTACTGT 7441 Query 125 GGCTGGTCATCCTCTCAGACCAGC-TAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||| |||||||||| |||| | || |||| |||||| ||| || ||| || | | Sbjct 7442 GGCTGATCATCCTCTCGTACCAACTTACTGATCATCGCCTTGGTATGCTATTGCCTCACA 7501 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||||||||| ||| | | | || | | | | | || ||| ||| |||| Sbjct 7502 AACTAGCTA-----ATCAGACTCAAGCCCCTCCTCA---GGCGGA--TTCCTCCT-TTTG 7550 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAG-TGGTTATCCCCCTCCATCA-- 300 || | | | || | ||||||||| || |||||||| || | |||||| || || Sbjct 7551 CTCCTTAGCC--TACGGGGTATTAGCAACTGTTTCCAGCTGTTGTTCCCCCCCCCCCAAG 7608 Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360 || || || | | ||| |||||| ||||||||| ||| || || || ||| Sbjct 7609 GGTAGGTTTTTACGCGTTATTCACCCATCCGCCACT------AGAAACACCA--CTTCTT 7660 Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || | ||||||||||||||||| ||||||| | | ||| ||||| Sbjct 7661 ---------GTCCAACTTGCATGTGTTAGGCATGCCGCCGGAGCTCATCCTGAG 7705 >seq533196 Length=6825 Score = 159 bits (176), Expect = 8e-37 Identities = 109/123 (89%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132 ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| || Sbjct 2471 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATC 2412 Query 133 ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192 |||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||||| Sbjct 2411 ATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTA 2352 Query 193 ATC 195 ||| Sbjct 2351 ATC 2349 >seq692555 Length=413 Score = 152 bits (168), Expect = 1e-34 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 || ||||||| ||| | |||||||| |||||||||| || ||||||||||||||||||| Sbjct 166 CATGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCCCACTGCTGCCTCC 225 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 ||||||||||||| ||||| |||||||||| |||||||| |||||||||| |||||| Sbjct 226 CGTAGGAGTCTGGGCCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGACCAG 282 >seq765720 Length=1578 Score = 149 bits (164), Expect = 2e-33 Identities = 148/191 (77%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||| | | | | |||| ||| ||| |||||||| |||||||| Sbjct 306 TTCACGACCCGTGGGCCCTTTACCTCCACGA--CATTGCTCTGTCAGGCTTTCGCCCATT 363 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || ||||||||||||||||||| ||||||||||| || ||||||||| | || | Sbjct 364 AAGGAAAATTCCCCACTGCTGCCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCTGGTAT 423 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || || |||||||||| ||||||||| |||| |||||| ||| || ||| | | ||| Sbjct 424 GGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGTCTCACCA 483 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 484 ACTAGCTAATC 494 >seq324309 Length=907 Score = 140 bits (154), Expect = 8e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 || ||||||| ||| | |||||||| | |||||||| || ||||||||||||| ||||| Sbjct 808 CATGCGGCATTGCTCCGTCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTACCTCC 749 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 ||||||||||||| |||| |||||||||| |||||||| |||||||||| |||||| Sbjct 748 CGTAGGAGTCTGGGTCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGACCAG 692 >seq57984 Length=346 Score = 138 bits (152), Expect = 3e-30 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 27 CATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGC 86 ||| ||| |||||| ||| |||||||||| || |||||| || ||||||| |||||| Sbjct 207 CATCCACACGGCATTGCTTCATCAGGCTTTCGTCCATTGCCGAAAATTCCCCGTTGCTGC 148 Query 87 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCA 146 ||| ||||||| ||||| || ||| ||| | ||| | | ||| ||||||||||| |||| Sbjct 147 CTCTCGTAGGACTCTGGGCCATGTTTCAATCCCAATATAACTGATCATCCTCTCAAACCA 88 Query 147 GCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| |||| |||||| || | ||| || | |||||||||||||| Sbjct 87 GCTACTGATCATCGCCTTAGTAAGTTATTGCCTCACCAACTAGCTAATC 39 >seq400464 Length=1501 Score = 131 bits (144), Expect = 4e-28 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||| | | | | ||||| || | ||| | |||| || ||||||||| | || |||||| Sbjct 544 GGCCATTTACCTCCACGCAGCTTTGCTCCGTCAGATTTTCGCCCATTGCGGAAAATTCCC 485 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 || |||||||||| ||||||||||| | ||||||| | |||||||||||| |||||| Sbjct 484 CATTGCTGCCTCCTGTAGGAGTCTGCGACTTGTCTCAATCCCAGTGTGGCTGATCATCCG 425 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 ||| | |||||| ||| || ||| ||| | ||| || | ||||||||||||| Sbjct 424 CTCGAATCAGCTACTAATCCTCACCTTGGTAATCTATTGCCTCACCAACTAGCTAAT 368 >seq74662 Length=794 Score = 116 bits (128), Expect = 9e-24 Identities = 109/136 (80%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || |||| ||||| ||| | | ||| |||||| ||| |||||||||| |||| | | Sbjct 526 TTCACGACCCATAGGCCCTCTACCTCCACACGGCATTGCTCCATCAGGCTTTCGCCTACT 585 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||| |||||||||| || |||| |||| |||||||||||| ||| ||| Sbjct 586 GCGGAAAATTCCCCATTGCTGCCTCC-GT-GGAGGCTGGGCCGTGTCTCAGTCCCAATGT 643 Query 125 GGCTGGTCATCCTCTC 140 |||| |||| ||||| Sbjct 644 GGCTAATCATTCTCTC 659 >seq106765 Length=629 Score = 109 bits (120), Expect = 1e-21 Identities = 112/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 51 GGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 ||||| || |||||| || ||| ||||||||||||||| |||||| ||||| |||| Sbjct 289 GGCTTTCGTCCATTGCAGAAAATTTCCCACTGCTGCCTCCAGTAGGAATCTGGGTTGTGT 348 Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170 ||||| ||| |||| |||| ||||| |||| |||||||| ||| | |||| ||| | Sbjct 349 CTCAG-TCCTGTGTAGCTGATCATCTTCTCGAACCAGCTACTAATCATTGCCTTGGTAAG 407 Query 171 CCATTACCCCGCCAACTAGCTAATC 195 | ||| | |||||||||||||| Sbjct 408 CTATTGTATCACCAACTAGCTAATC 432 >seq428776 Length=928 Score = 102 bits (112), Expect = 2e-19 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||| ||| | | ||| || ||| ||| | |||||||| |||||||| Sbjct 111 TTCACGACCCGTGGGCCCTCTACCTCCACACGACATTGCTCCGTCAGGCTTTCGCCCATT 170 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 | | || |||||||||||||||||||||||||||||||| Sbjct 171 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 209 >seq766578 Length=9890 Score = 100 bits (110), Expect = 7e-19 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165 ||||||||||| ||||||||||| |||||||||| ||||||||| |||| |||||| | Sbjct 2896 CGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTGATCATCGCCTTG 2955 Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATC 195 || || ||| || | |||||||||||||| Sbjct 2956 GTAAGCGATTGCCTCACCAACTAGCTAATC 2985 >seq737182 Length=910 Score = 100 bits (110), Expect = 7e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43 CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 102 ||| ||||||||| |||||||||| ||| ||| |||||||||||| ||| |||||||| Sbjct 560 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCACGGGAGTCTG 619 Query 103 GACCGTGTCTCAGTTCCAGTGTG 125 | |||||||||||| |||||||| Sbjct 620 GGCCGTGTCTCAGTCCCAGTGTG 642 >seq239742 Length=404 Score = 100 bits (110), Expect = 7e-19 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43 CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 102 ||| ||||||||| |||||||||| ||| ||| |||||||||||| |||| |||||||| Sbjct 250 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCGCGGGAGTCTG 191 Query 103 GACCGTGTCTCAGTTCCAGTGTG 125 | |||||||| ||| |||||||| Sbjct 190 GGCCGTGTCTAAGTCCCAGTGTG 168 >seq581694 Length=7463 Score = 98.7 bits (108), Expect = 2e-18 Identities = 86/106 (81%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || |||||| | |||| ||| | | ||| ||||| ||| | |||||||| |||||||| Sbjct 3789 TTCACAACC-GTGGGCCCTCTACCTCCACACGGCACTGCTCCGTCAGGCTTTCGCCCATT 3847 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110 | | || ||||||||||||||||||| |||||||||||| ||||| Sbjct 3848 GCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGGCGTGT 3893 >seq97894 Length=709 Score = 89.7 bits (98), Expect = 1e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 82 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCA 141 |||||||||||||||||| || |||||||||||| ||| ||||||| |||||||||| Sbjct 559 GCTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAGTCCCAATGTGGCTAATCATCCTCTCG 618 Query 142 GACCAGCTA 150 ||||||||| Sbjct 619 GACCAGCTA 627 >seq50221 Length=719 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||| | Sbjct 436 CTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAATCCCAATGTGGCTAATCATCCTCTCGG 495 Query 143 ACCAGCTA 150 |||||||| Sbjct 496 ACCAGCTA 503 >seq734306 Length=5446 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||| |||| ||| ||||| |||| ||||||||| | || ||||||||||||||||||| Sbjct 1282 CACGCAGCATTGCTCCATCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 1223 Query 91 CGT 93 ||| Sbjct 1222 CGT 1220 >seq493993 Length=1475 Score = 78.8 bits (86), Expect = 2e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||| |||| ||| ||||| |||| ||||||||| | || ||||||||||||||||||| Sbjct 866 CACGCAGCATTGCTCCATCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 807 Query 91 CGT 93 ||| Sbjct 806 CGT 804 >seq509365 Length=1137 Score = 75.2 bits (82), Expect = 3e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 114 || |||||||||||||||||||||||||||||||| |||||||||| Sbjct 861 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1212690623488