Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20]
794,288 sequences; 740,035,655 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq456161 221 3e-55
seq559850 161 2e-37
seq609128 159 8e-37
seq533196 159 8e-37
seq692555 152 1e-34
seq765720 149 2e-33
seq324309 140 8e-31
seq57984 138 3e-30
seq400464 131 4e-28
seq74662 116 9e-24
seq106765 109 1e-21
seq428776 102 2e-19
seq766578 100 7e-19
seq737182 100 7e-19
seq239742 100 7e-19
seq581694 98.7 2e-18
seq97894 89.7 1e-15
seq50221 82.4 2e-13
seq734306 78.8 2e-12
seq493993 78.8 2e-12
seq509365 75.2 3e-11
>seq456161
Length=1433
Score = 221 bits (244), Expect = 3e-55
Identities = 295/410 (72%), Gaps = 29/410 (7%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||| ||| | | |||||||||| ||| | |||||||| | ||||||
Sbjct 376 TTCACGACCCGTGGGCCCTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCACCCATT 435
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 436 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCGTGTCTTAGTCCCAGTGT 495
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 496 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 555
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | ||| | | | || | | ||| ||||
Sbjct 556 ACTAGCTAATCAAACGCAAGCCCCTCC--TCGGG-------CGGATTTTTTCCT-TTTGC 605
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| ||||||||| ||| | ||||||| || |
Sbjct 606 TCCTCAGCC--TACGGGGTATTAGCAGTCGTTTCCAGATGTTGTTCCCCTCCCAAGGGTA 663
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | ||||||||||||| | |||| ||| || ||
Sbjct 664 GGTTCTTATGCGTTACTCACCCGTCTGTCACT------GGAAACA-----------CCAT 706
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| |||| ||||||||||||||||||| ||||||||||||||| |||||
Sbjct 707 TTCCCGTCCGACTTGCATGTGTTAGGCATGCCGCCAGCGTTCATCCTGAG 756
>seq559850
Length=11969
Score = 161 bits (178), Expect = 2e-37
Identities = 110/124 (89%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 72 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGT 131
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 4902 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 4961
Query 132 CATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCT 191
||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||||
Sbjct 4962 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 5021
Query 192 AATC 195
||||
Sbjct 5022 AATC 5025
>seq609128
Length=9556
Score = 159 bits (176), Expect = 8e-37
Identities = 288/414 (70%), Gaps = 34/414 (8%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||| ||| | | |||||||||| ||| | |||| ||| |||||||
Sbjct 7322 TTCACGACCCGTGGGCCCTCTACCTCCACGCGGCATTGCTCCGTCAGACTTTTGCCCATT 7381
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||| |||||||||| |||||||| ||| ||||||||||| | | |||
Sbjct 7382 GAGGAAAATTCCCCATTGCTGCCTCCTGTAGGAGTTTGGGTCGTGTCTCAGTCCTACTGT 7441
Query 125 GGCTGGTCATCCTCTCAGACCAGC-TAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||||| |||||||||| |||| | || |||| |||||| ||| || ||| || | |
Sbjct 7442 GGCTGATCATCCTCTCGTACCAACTTACTGATCATCGCCTTGGTATGCTATTGCCTCACA 7501
Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243
||||||||| ||| | | | || | | | | | || ||| ||| ||||
Sbjct 7502 AACTAGCTA-----ATCAGACTCAAGCCCCTCCTCA---GGCGGA--TTCCTCCT-TTTG 7550
Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAG-TGGTTATCCCCCTCCATCA-- 300
|| | | | || | ||||||||| || |||||||| || | |||||| || ||
Sbjct 7551 CTCCTTAGCC--TACGGGGTATTAGCAACTGTTTCCAGCTGTTGTTCCCCCCCCCCCAAG 7608
Query 301 GGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTT 360
|| || || | | ||| |||||| ||||||||| ||| || || || |||
Sbjct 7609 GGTAGGTTTTTACGCGTTATTCACCCATCCGCCACT------AGAAACACCA--CTTCTT 7660
Query 361 CCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| | ||||||||||||||||| ||||||| | | ||| |||||
Sbjct 7661 ---------GTCCAACTTGCATGTGTTAGGCATGCCGCCGGAGCTCATCCTGAG 7705
>seq533196
Length=6825
Score = 159 bits (176), Expect = 8e-37
Identities = 109/123 (89%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 2471 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATC 2412
Query 133 ATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192
|||||||| ||||||||| |||| |||||| ||| || ||| || | |||||||||||
Sbjct 2411 ATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTA 2352
Query 193 ATC 195
|||
Sbjct 2351 ATC 2349
>seq692555
Length=413
Score = 152 bits (168), Expect = 1e-34
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
|| ||||||| ||| | |||||||| |||||||||| || |||||||||||||||||||
Sbjct 166 CATGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCCCACTGCTGCCTCC 225
Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147
||||||||||||| ||||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 226 CGTAGGAGTCTGGGCCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGACCAG 282
>seq765720
Length=1578
Score = 149 bits (164), Expect = 2e-33
Identities = 148/191 (77%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||| | | | | |||| ||| ||| |||||||| ||||||||
Sbjct 306 TTCACGACCCGTGGGCCCTTTACCTCCACGA--CATTGCTCTGTCAGGCTTTCGCCCATT 363
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| || ||||||||||||||||||| ||||||||||| || ||||||||| | || |
Sbjct 364 AAGGAAAATTCCCCACTGCTGCCTCCTATAGGAGTCTGGGCCATGTCTCAGTCCTGGTAT 423
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|| || |||||||||| ||||||||| |||| |||||| ||| || ||| | | |||
Sbjct 424 GGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGTCTCACCA 483
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 484 ACTAGCTAATC 494
>seq324309
Length=907
Score = 140 bits (154), Expect = 8e-31
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
|| ||||||| ||| | |||||||| | |||||||| || ||||||||||||| |||||
Sbjct 808 CATGCGGCATTGCTCCGTCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTACCTCC 749
Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147
||||||||||||| |||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 748 CGTAGGAGTCTGGGTCGTGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGACCAG 692
>seq57984
Length=346
Score = 138 bits (152), Expect = 3e-30
Identities = 132/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 27 CATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGC 86
||| ||| |||||| ||| |||||||||| || |||||| || ||||||| ||||||
Sbjct 207 CATCCACACGGCATTGCTTCATCAGGCTTTCGTCCATTGCCGAAAATTCCCCGTTGCTGC 148
Query 87 CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCA 146
||| ||||||| ||||| || ||| ||| | ||| | | ||| ||||||||||| ||||
Sbjct 147 CTCTCGTAGGACTCTGGGCCATGTTTCAATCCCAATATAACTGATCATCCTCTCAAACCA 88
Query 147 GCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||| |||| |||||| || | ||| || | ||||||||||||||
Sbjct 87 GCTACTGATCATCGCCTTAGTAAGTTATTGCCTCACCAACTAGCTAATC 39
>seq400464
Length=1501
Score = 131 bits (144), Expect = 4e-28
Identities = 135/177 (76%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77
|||| | | | | ||||| || | ||| | |||| || ||||||||| | || ||||||
Sbjct 544 GGCCATTTACCTCCACGCAGCTTTGCTCCGTCAGATTTTCGCCCATTGCGGAAAATTCCC 485
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
|| |||||||||| ||||||||||| | ||||||| | |||||||||||| ||||||
Sbjct 484 CATTGCTGCCTCCTGTAGGAGTCTGCGACTTGTCTCAATCCCAGTGTGGCTGATCATCCG 425
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
||| | |||||| ||| || ||| ||| | ||| || | |||||||||||||
Sbjct 424 CTCGAATCAGCTACTAATCCTCACCTTGGTAATCTATTGCCTCACCAACTAGCTAAT 368
>seq74662
Length=794
Score = 116 bits (128), Expect = 9e-24
Identities = 109/136 (80%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || |||| ||||| ||| | | ||| |||||| ||| |||||||||| |||| | |
Sbjct 526 TTCACGACCCATAGGCCCTCTACCTCCACACGGCATTGCTCCATCAGGCTTTCGCCTACT 585
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||| |||||||||| || |||| |||| |||||||||||| ||| |||
Sbjct 586 GCGGAAAATTCCCCATTGCTGCCTCC-GT-GGAGGCTGGGCCGTGTCTCAGTCCCAATGT 643
Query 125 GGCTGGTCATCCTCTC 140
|||| |||| |||||
Sbjct 644 GGCTAATCATTCTCTC 659
>seq106765
Length=629
Score = 109 bits (120), Expect = 1e-21
Identities = 112/145 (77%), Gaps = 1/145 (1%)
Strand=Plus/Plus
Query 51 GGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110
||||| || |||||| || ||| ||||||||||||||| |||||| ||||| ||||
Sbjct 289 GGCTTTCGTCCATTGCAGAAAATTTCCCACTGCTGCCTCCAGTAGGAATCTGGGTTGTGT 348
Query 111 CTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGG 170
||||| ||| |||| |||| ||||| |||| |||||||| ||| | |||| ||| |
Sbjct 349 CTCAG-TCCTGTGTAGCTGATCATCTTCTCGAACCAGCTACTAATCATTGCCTTGGTAAG 407
Query 171 CCATTACCCCGCCAACTAGCTAATC 195
| ||| | ||||||||||||||
Sbjct 408 CTATTGTATCACCAACTAGCTAATC 432
>seq428776
Length=928
Score = 102 bits (112), Expect = 2e-19
Identities = 82/99 (83%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||| ||| | | ||| || ||| ||| | |||||||| ||||||||
Sbjct 111 TTCACGACCCGTGGGCCCTCTACCTCCACACGACATTGCTCCGTCAGGCTTTCGCCCATT 170
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103
| | || ||||||||||||||||||||||||||||||||
Sbjct 171 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 209
>seq766578
Length=9890
Score = 100 bits (110), Expect = 7e-19
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165
||||||||||| ||||||||||| |||||||||| ||||||||| |||| |||||| |
Sbjct 2896 CGTGTCTCAGTCCCAGTGTGGCTAATCATCCTCTCGGACCAGCTACTGATCATCGCCTTG 2955
Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATC 195
|| || ||| || | ||||||||||||||
Sbjct 2956 GTAAGCGATTGCCTCACCAACTAGCTAATC 2985
>seq737182
Length=910
Score = 100 bits (110), Expect = 7e-19
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43 CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 102
||| ||||||||| |||||||||| ||| ||| |||||||||||| ||| ||||||||
Sbjct 560 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCACGGGAGTCTG 619
Query 103 GACCGTGTCTCAGTTCCAGTGTG 125
| |||||||||||| ||||||||
Sbjct 620 GGCCGTGTCTCAGTCCCAGTGTG 642
>seq239742
Length=404
Score = 100 bits (110), Expect = 7e-19
Identities = 72/83 (87%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 43 CTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 102
||| ||||||||| |||||||||| ||| ||| |||||||||||| |||| ||||||||
Sbjct 250 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCGCGGGAGTCTG 191
Query 103 GACCGTGTCTCAGTTCCAGTGTG 125
| |||||||| ||| ||||||||
Sbjct 190 GGCCGTGTCTAAGTCCCAGTGTG 168
>seq581694
Length=7463
Score = 98.7 bits (108), Expect = 2e-18
Identities = 86/106 (81%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| |||||| | |||| ||| | | ||| ||||| ||| | |||||||| ||||||||
Sbjct 3789 TTCACAACC-GTGGGCCCTCTACCTCCACACGGCACTGCTCCGTCAGGCTTTCGCCCATT 3847
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGT 110
| | || ||||||||||||||||||| |||||||||||| |||||
Sbjct 3848 GCGGAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTGGGGCGTGT 3893
>seq97894
Length=709
Score = 89.7 bits (98), Expect = 1e-15
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 82 GCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCA 141
|||||||||||||||||| || |||||||||||| ||| ||||||| ||||||||||
Sbjct 559 GCTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAGTCCCAATGTGGCTAATCATCCTCTCG 618
Query 142 GACCAGCTA 150
|||||||||
Sbjct 619 GACCAGCTA 627
>seq50221
Length=719
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||| |
Sbjct 436 CTGCCTCCCGTAGGAGTTTGAGCCGTGTCTCAATCCCAATGTGGCTAATCATCCTCTCGG 495
Query 143 ACCAGCTA 150
||||||||
Sbjct 496 ACCAGCTA 503
>seq734306
Length=5446
Score = 78.8 bits (86), Expect = 2e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
||||| |||| ||| ||||| |||| ||||||||| | || |||||||||||||||||||
Sbjct 1282 CACGCAGCATTGCTCCATCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 1223
Query 91 CGT 93
|||
Sbjct 1222 CGT 1220
>seq493993
Length=1475
Score = 78.8 bits (86), Expect = 2e-12
Identities = 55/63 (87%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
||||| |||| ||| ||||| |||| ||||||||| | || |||||||||||||||||||
Sbjct 866 CACGCAGCATTGCTCCATCAAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCC 807
Query 91 CGT 93
|||
Sbjct 806 CGT 804
>seq509365
Length=1137
Score = 75.2 bits (82), Expect = 3e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCA 114
|| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 861 AAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCA 816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1212690623488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |