Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq428777 244 3e-62 seq456161 212 1e-52 seq609128 143 6e-32 seq556442 113 1e-22 seq765721 107 5e-21 seq718370 105 2e-20 seq765720 95.1 3e-17 seq757935 86.0 1e-14 seq625280 82.4 2e-13 seq64879 78.8 2e-12 seq544836 77.0 8e-12 >seq428777 Length=1304 Score = 244 bits (270), Expect = 3e-62 Identities = 301/406 (74%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | ||||||| ||||||||||||||| ||| || ||| || || Sbjct 1253 TGGGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCGATAAGACAAAGGATGCATGC 1194 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 | |||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 1193 GCTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 1134 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | |||||||||||| || || | | || ||| | | ||| |||| | | |||||| Sbjct 1133 TCCCATGGCTCAACCCTGG-ACAGATGGTGGAAAATACCAAGCTGGAGTACGGTAGGGGC 1075 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||| | ||| |||||||||||||||||| || | | |||||||| ||| | Sbjct 1074 AGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCAA 1015 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || |||||| | | |||||||||||| ||||||| ||||||| || |||| Sbjct 1014 AAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGAT 955 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGT 362 ||||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 954 TAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACC 896 Query 363 GCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| | ||| ||||| ||||||| || ||||||||||| Sbjct 895 CGTGCAGTGTTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 850 >seq456161 Length=1433 Score = 212 bits (234), Expect = 1e-52 Identities = 254/345 (74%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||| ||| |||| | ||||||| ||||||| ||||||||||| || ||| || Sbjct 345 TATTTGGGGAATAAGCATCAGCTAACTCTGTGCCAGTAGCCGCGGTAAGACAGAGGATGC 286 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||| |||| ||||| | ||||||||||| || |||| ||| || ||||||| | || Sbjct 285 AAGCGATATCTGGAATGATTGGGCGTAAAGCGTCTGTAGTTGGCTTTTTAAGTCCGCCGT 226 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||| | | ||||||||| || || | ||| || | ||| |||| | | ||| Sbjct 225 CAAATCCCAGGGCTCAACCTTGGACAGGCAGTGGAAGCTACCAAGCTGGAGTACGGTAGG 166 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 | || |||||| | ||| || ||||||||| ||||| || || | |||||||| || Sbjct 165 GACAGAGGGAATTTCCGGTGGAGTGGTGAAATGTGTAGAGATCAGAAAGAACACCAACGG 106 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 |||| || ||||| | | |||||||||||| ||||||| ||||||| || | Sbjct 105 CGAAAGCACTCTGCTGCGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 46 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||||||||| ||||||| ||||||||||||| |||||||| Sbjct 45 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGG 1 >seq609128 Length=9556 Score = 143 bits (158), Expect = 6e-32 Identities = 244/351 (70%), Gaps = 7/351 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||| ||| |||| || |||||| ||||||||||| || |||| || ||| || Sbjct 7291 TATTTGGGGAATAAGCATCGACTAACTCTGTGCCAGCAGCTGCAGTAAGACAGAGGATGC 7232 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||||||| |||| | |||| || ||| || ||||||| || ||||||| | || Sbjct 7231 AAGCGTTATCCAGAATGATTGGGTGTCAAGCGTCTGTAGGTGACTTTTTAAGTCCGCCGT 7172 Query 121 GAAAGGCTATGGCTCAACCCCGG---GACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG 177 ||| | | || ||||||| || ||| | | |||| | | ||| |||| | Sbjct 7171 CAAATCCCAAGGTTCAACCCTGGATAGACAG---TGGAAATTACCAAGCTGGAGTATGGT 7115 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 |||| || ||| || ||| || ||||||||||||||| ||| | |||||||| Sbjct 7114 AGGGACAGAGGGATTTTTCGGTGGAGAGGTGAAATGCGTAGAGATTGAAAAGAACACCAA 7055 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 ||||| || | || | | | ||| ||||| || ||||||| ||||||| || Sbjct 7054 CAGCGAAAGCACTCTACTAGGCCGACACTAACACTAAGAGACGAAAGCCAGGGGAGCGAA 6995 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||| ||||| ||||| | | |||||| |||| ||||| || || Sbjct 6994 TGGGATTAG-TACCCCAGTAGTTCTAGTCGTAAATGATGGATACTGGGCGT 6945 >seq556442 Length=3558 Score = 113 bits (124), Expect = 1e-22 Identities = 230/341 (67%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| || |||||| || |||||||| || ||| || | | || ||| Sbjct 1121 TGGGGAATAAGCATCGACTAACTCTGTATCAGCAGCCACGATAAGACAGATGATGCAAGC 1180 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||||||||| | || |||||||| | |||||||| || ||||||| | ||| Sbjct 1181 ATTATCCGGAATGATTGTGCGTAAAGCATATGTAGGTGGCTTTTTAAGTCCACCGACAAA 1240 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||| ||| |||| | || |||| | |||||||| | | ||||| | Sbjct 1241 TCCCAAGGCTCAA-CCCTGGACAGGCAGTGGAACTACCAAGCTAGAGTACGGTAGGGGTA 1299 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 | |||| ||| || |||||||||| |||| || || | ||||| || | |||| Sbjct 1300 GAGGTAATTTTCGGTGAAGAGGTGAAATGCATAGACATAAGAAAGAACAGCAACGACGAA 1359 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||| | | |||||||||||| | ||| | | || | ||| Sbjct 1360 AGCAATCTGCTAGGTCGACACTGACACTGAGATACAAAA-------GTTCGAATGGTATT 1412 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||| |||||| |||||||||||| |||| ||| Sbjct 1413 AGATACCTCAGTAGTCATATCCGTAAACGATGGATACGAGG 1453 >seq765721 Length=980 Score = 107 bits (118), Expect = 5e-21 Identities = 204/293 (70%), Gaps = 17/293 (6%) Strand=Plus/Minus Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 ||||||||||| | ||| |||||| || |||||||| || ||||| | | || Sbjct 961 TTATCCGGAATGATAGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGCCCGCCGT-CTTT 903 Query 126 GCTATGGCTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||| | |||| | | | |||||| | ||| |||| ||| ||| ||| Sbjct 902 CCCAGGGCTCAA-TCTTGGACAGGTGGTGGAAACTACCAAGCTGGAGTACAGTAGGTGCA 844 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA- 243 |||||| || ||| || |||||||||| ||| ||| | |||||||| ||| || Sbjct 843 GAGGGAATTTCTGGTGGAGTGGTGAAATGCATAGGGATTGAAAAGAACACCAATGGTGAG 784 Query 244 --------AGGCGGCT--TGCTG-GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGA 292 | |||| ||| |||| |||||||||||| ||||| | | |||| Sbjct 783 AACACTCTATTGGGCTGACACTGACACTGACACTGACACTGAGAAACGAAAAC-TAGGGA 725 Query 293 GCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 || || |||||||||| ||| |||||| ||||||||||||| |||||||| Sbjct 724 GCGAATGGGATTAGATA-CCTCATAGTCCTAGCCGTAAACGATGGATACTAGG 673 >seq718370 Length=927 Score = 105 bits (116), Expect = 2e-20 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 169 GAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAG 228 |||| | | ||||| | |||||| || ||| |||||||||||||||||| ||||| | Sbjct 381 GAGTACGGTAGGGGTAGAAGGAATTTCTGGTGGAGCGGTGAAATGCGTAGAGATTAGAAA 322 Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| | || || || |||| | | | ||| |||||||| |||||| | Sbjct 321 GAACACCAATAGCAAAAGCACTCTGCTAGGC-GACACTAACACTGAGAGATGAAAGCTAG 263 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 ||||| ||| ||||||||||||| ||||| ||||||||| | |||| || Sbjct 262 GGGAGAAAATGGGATTAGATACCCCAATAGTCGTAGCCGTAAACAACTAATAGTA 208 >seq765720 Length=1578 Score = 95.1 bits (104), Expect = 3e-17 Identities = 181/263 (69%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| || |||||| ||||||||| ||||||||| | || || | | ||||||| Sbjct 263 AAGCATCGACTAACTCTGTGCCAGCAACCGCGGTAAGATAGAGTATGCAAACATTATCCG 204 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||| |||||| || |||||||| || ||||| | | || | | || Sbjct 203 GAATGATAGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGCCCGCCGT-CTTTCCCAGGG 145 Query 133 CTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||| | |||| | | | |||||| | ||| |||| ||| ||| ||| |||| Sbjct 144 CTCAA-TCTTGGACAGGTGGTGGAAACTACCAAGCTGGAGTACAGTAGGTGCAGAGGGAA 86 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || || ||| || |||||||||| ||| ||| | |||||||| ||| || | Sbjct 85 TTTCTGGTGGAGTGGTGAAATGCATAGGGATTGAAAAGAACACCAATGGTGAGAACACTC 26 Query 252 TGCTGGACTGTAACTGACACTGA 274 | ||| ||| ||||||||||| Sbjct 25 TATTGGGCTGACACTGACACTGA 3 >seq757935 Length=1809 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||||| || ||| || |||||||| | ||||||||||| |||||| | Sbjct 1 GAACACCAACGGTGAAAGCACTCTGCTGGACCGACACTGACACTGAAAGATGAAAGCTAG 60 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||| || ||||||||||||| ||||||| || |||||| ||| |||||||| Sbjct 61 GGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCTGTAAACAATGGATACTAGG 117 >seq625280 Length=2029 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||||| ||||||| || |||||||||||| ||||||| Sbjct 1371 ACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGAGATTAGATACCCCAGTAGTCCTA 1430 Query 324 GCCGTAAACGATGAATACTAGGTGT 348 || |||||||||| |||||||| || Sbjct 1431 GCTGTAAACGATGGATACTAGGCGT 1455 >seq64879 Length=874 Score = 78.8 bits (86), Expect = 2e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 |||||||||||| | ||| || ||||||||||||||| | ||||||||||| || | Sbjct 759 CAGCCGCGGTAAGATAGAGGATGCAAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTG 818 Query 97 TAGGTGGTTTCTTAAGTC 114 ||||||| || ||||||| Sbjct 819 TAGGTGGCTTTTTAAGTC 836 >seq544836 Length=6517 Score = 77.0 bits (84), Expect = 8e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 281 AAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||| |||| ||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 340 AAAGAATGGGAAGCGAACAGGATCAGATACCCTGGTAGTCCATGCCGTAAACGATGA 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1193643126784