Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq413603 268 2e-69 seq363786 251 1e-64 seq549470 185 2e-44 seq675412 114 2e-23 seq550661 89.7 1e-15 >seq413603 Length=1102 Score = 268 bits (296), Expect = 2e-69 Identities = 218/260 (84%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| |||| | | |||| | ||||||||||||||||||||| || Sbjct 10 CTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GAAAGTTTGAGGCAATAACAGGTTTG 67 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||| || Sbjct 68 TGATGCCCTTAGATGTTCTGTGCCGCACGCGCGCTACACTGATGTATTCAATGAGTTTAT 127 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 || ||||| ||| | ||||||||| | ||| | ||||| |||||||||| ||| Sbjct 128 AGCCACGGCCGACAGGCCCAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 186 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||| Sbjct 187 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTTGA 246 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 247 CTACGTCCCTGCCCTTTGTA 266 >seq363786 Length=1299 Score = 251 bits (278), Expect = 1e-64 Identities = 209/251 (83%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||||||| |||| | | |||| | ||||||||||||||||||||| || Sbjct 248 CTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GAAAGTTTGAGGCAATAACAGGTTTG 191 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 |||||||||||||||||||| ||||||||||||||||||||| | ||| ||||| || Sbjct 190 TGATGCCCTTAGATGTTCTGTGCCGCACGCGCGCTACACTGATGTATTCAATGAGTTTAT 131 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 || ||||| ||| | ||||||||| | ||| | ||||| |||||||||| ||| Sbjct 130 AGCCACGGCCGACAGGCCCAGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 72 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||| Sbjct 71 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAGCTCGCGTTGA 12 Query 309 TTACGTCCCTG 319 |||||||||| Sbjct 11 CTACGTCCCTG 1 >seq549470 Length=5376 Score = 185 bits (204), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| ||||||||| ||||||| |||| | || | ||||||||||||||||| ||| Sbjct 589 GCCAGCTTCTTAGCGGGACTA-CGGCCTTTTAGGCTGCAGAAGTTTGAGGCAATAATAGG 531 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||||||||||||||||||||| |||||||||| ||||||||||||| | |||| ||| Sbjct 530 TCTGTGATGCCCTTAGATGTTTTGGGCCGCACACGCGCTACACTGATGTATTCAACAAGT 471 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || | ||||||| | | | |||||||||| | ||| | | ||| || ||||| | Sbjct 470 TTATAGCATTGGCCGACATGCCCGGGTAATCTT-TGAAATTTCATTGTGATGAGGATAAA 412 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||||||| ||| ||||| | ||||||| ||||||||||| Sbjct 411 TCATTGCAATTGTTGGTCTTCCATGAGGAATTCCTAGTAAGCG 369 >seq675412 Length=14713 Score = 114 bits (126), Expect = 2e-23 Identities = 67/68 (99%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 10834 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC-TAGATGTTCTGGGCCGCACGCGCGC 10892 Query 163 TACACTGA 170 |||||||| Sbjct 10893 TACACTGA 10900 >seq550661 Length=2254 Score = 89.7 bits (98), Expect = 1e-15 Identities = 142/197 (72%), Gaps = 14/197 (7%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| | || | | |||||||| |||| | | |||| | |||||||||||||||| | Sbjct 493 GCCAGGTTTTAAAAGGGACTA-CGGCCTTTTAGGCCGC-GAAAGTTTGAGGCAATAATAA 436 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 |||| ||||||||| ||||||||||| |||||| | |||||||| | | ||||| Sbjct 435 GTCTATGATGCCCTCAGATGTTCTGGACCGCACACATGCTACACTAATGTCTTCGACGAG 376 Query 184 TTCATCACCTTGG----CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGG 239 || || | |||| ||||| || || ||||||| | ||| | ||||| || | Sbjct 375 TTTATAGCTTTGGTTGACCGGA---TC-GGATAATCTT-TGAAATTTCATCGTGATGAAG 321 Query 240 ATAGAGCATTGCAATTA 256 | ||| ||||| ||||| Sbjct 320 AAAGATCATTGTAATTA 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 939676504064