Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq425928 89.7 9e-16 seq260762 82.4 1e-13 seq574427 75.2 2e-11 seq437283 75.2 2e-11 seq664690 73.4 7e-11 >seq425928 Length=446 Score = 89.7 bits (98), Expect = 9e-16 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| || ||| |||||| |||||||||| |||||| | Sbjct 308 TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAATTGAAACATCTTAGTAGCCAGA 249 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| | |||||| |||||| ||||| ||||| Sbjct 248 GGAAAAGAAAGCAAAAGCGATTCCCGTAATAGTGGTGAGCGAGGTGGGAACAGCCT 193 >seq260762 Length=365 Score = 82.4 bits (90), Expect = 1e-13 Identities = 136/191 (71%), Gaps = 13/191 (7%) Strand=Plus/Plus Query 57 GATAA--GCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAA 114 ||||| ||| |||||||| | ||| | | |||||| ||||| |||||| ||| || Sbjct 49 GATAAATGCTTCGGGGAGTT-GAAAATAAGCGGAGATCCGGAGATTCCCGAATAGGGCAA 107 Query 115 CCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAA 173 | ||| | | |||| ||||||| ||| || |||| || ||| ||| || Sbjct 108 CG------TTTCGAAC--TGCA-GCTGAATCCATGGGCCGGCAAGAGACAACCTGGCAAA 158 Query 174 CTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGA 233 |||||||||| ||||| ||||||||||| ||| | ||||||| ||||| || || Sbjct 159 TTGAAACATCTTTGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTTAGTAGCGGTGA 218 Query 234 GCGAAATGGGA 244 |||| |||||| Sbjct 219 GCGAGATGGGA 229 >seq574427 Length=10516 Score = 75.2 bits (82), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | |||| | ||| |||||| | |||| ||| |||||| | Sbjct 2051 TGCTGAATCCATGGGCAGGCAAGAAACAACCTGGCGAATTAAAACTTCTTAGTAGCCAGA 1992 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||| | ||||| || |||||| |||||| ||||| Sbjct 1991 GGAAAAGAAAGCAAAAGCGATTCTCGTAGTAGCGGTGAGCGAGATGGGAGCAGCCT 1936 >seq437283 Length=568 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 493 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 552 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 553 GGCGAGCGA 561 >seq664690 Length=934 Score = 73.4 bits (80), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 12/157 (8%) Strand=Plus/Minus Query 89 GATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACAT 148 |||||| ||||| |||||| ||| ||| ||| | | ||| |||||||| ||| Sbjct 358 GATCCGGAGATTCCCGAATAGGGCAACG------TTTCGAAC--TGC-TGCTGAATCCAT 308 Query 149 AGGTATGCAAA-GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATC 207 || | ||||| | ||| || || ||| ||||| |||||| ||||||||||| | Sbjct 307 GGGCAGGCAAAAGACAACCTGGTAAATTGA--CATCTTAGTAGCCAGAGGAAAAGAAAGC 250 Query 208 AACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 || | ||||||| ||||| || |||||| |||||| Sbjct 249 AAAAGCGATTCCCTTAGTAGCGGTGAGCGAGATGGGA 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911105259008