Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq532454 585 9e-165 seq602177 509 5e-142 seq664025 159 1e-36 seq329417 147 7e-33 seq489699 140 1e-30 >seq532454 Length=8848 Score = 585 bits (648), Expect = 9e-165 Identities = 455/533 (85%), Gaps = 8/533 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| || || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 4626 CTTCTGTTCGACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 4567 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||| Sbjct 4566 TTTTAACAGATGTGCCGCCCCA-CCAAACTCCCCCCCTGACAATGTATTCCGCCCGGATC 4508 Query 127 GGCCCGC-GAAG-GA-CCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 | | ||| || | || |||| ||| ||| || || | || | ||||| |||| Sbjct 4507 GACTCGCCGATGCGAGCCTTGGGTCCAAAAAGAGG--GGCAGCGCCCCGCTTCCGATTCA 4450 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCA 242 | ||||||||| |||| ||| |||||||||||||| || |||| |||||||| Sbjct 4449 CGAAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCATTTTCGCCTTTT-GGCTCCCA 4391 Query 243 CTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGT 302 ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 4390 CTTATCCTACACCTCTCAAGTCATTTCACAAAGTCAGACTAGAGTCAAGCTCAATAGGGT 4331 Query 303 CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA 362 ||||||||||| |||||||| || | ||| |||||||||||||||||| ||| ||||||| Sbjct 4330 CTTCTTTCCCCACTGATTCCTCCTAACCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTA 4271 Query 363 GATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGG 422 || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 4270 GACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGAGA 4211 Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| Sbjct 4210 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCTGATGTTTACCCACGCTTGGTTGAAT 4151 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||| || ||||||||||||||||||| | | |||| Sbjct 4150 TTCTTCACTTTGACATTCAGAACATTGGGCAGAAATCACATTGCATGAGCATC 4098 >seq602177 Length=626 Score = 509 bits (564), Expect = 5e-142 Identities = 324/349 (93%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTAT 247 ||||||||| || | ||| ||||||||||||||||| |||| | |||||||||||| Sbjct 504 TAAGTAAAATAATGTTAAAAGTAGTGGTATTTCACTTTCGCCTTT-CAGCTCCCACTTAT 446 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 CCTACACCTCTCAAGTTATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 386 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||| || Sbjct 385 TTCCCCGCTGATTCCGCGAAGCCCGTTCCCTTGGATGTGGTTTTGCTGGATAGTAGACAG 326 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA-TTAGATGACGAGGCATT 426 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 325 GGACAGTGGGAATCTCGTTAATCCATCCATGCGCGTCACTAATTTAGATGACGAGGCATT 266 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 265 TGGCTACCTTAAGAGACTCATAGTTACTCCCGCCGTTTACCCGCACTTGGTTGAATTTCT 206 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||| ||||||||| | |||| Sbjct 205 TCACTTTGACATTCAGAGCACTGGGCAGAAATTACATTGCGTGAGCATC 157 >seq664025 Length=3750 Score = 159 bits (176), Expect = 1e-36 Identities = 162/207 (78%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAGGA---CC 141 ||||||||||||||| ||||||||||||| || |||||||||||||| | ||| || Sbjct 204 CCCAGCCAAACTCCCTACCTGACAATGTCTTCCACCCGGATCGGCCCACCGAGGCGAGCC 145 Query 142 TTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaC 200 || ||| || | || | ||| || |||| |||| || ||||||||| ||| Sbjct 144 TTGGGTCCAAAACGAGGGGCAGTGCC--CCGCCTCCGATTCACGGAATAAGTAAAATAAC 87 Query 201 GATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCA 260 ||| ||||||| | || |||| |||| |||||||||||||| |||||||||||| Sbjct 86 ATTAAAAGTAGTGGAAATTAACTTTCGCCTTT-CGGCTCCCACTTATCCTACACCTCTCA 28 Query 261 AGTCATTTCACAAAGTCGGACTAGAGT 287 ||||||||||||||||||||||||||| Sbjct 27 AGTCATTTCACAAAGTCGGACTAGAGT 1 >seq329417 Length=548 Score = 147 bits (162), Expect = 7e-33 Identities = 83/84 (99%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 60 Query 512 CAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||| |||||| Sbjct 61 CAGAAATCACATTGCGTAAACATC 84 >seq489699 Length=4116 Score = 140 bits (154), Expect = 1e-30 Identities = 119/146 (82%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 271 CAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCC 330 |||||| |||||||| |||| ||||| || ||||||||||| || |||||| |||||||| Sbjct 1712 CAAAGTTGGACTAGAATCAATCTCAATAGAGTCTTCTTTCCTCGTTGATTCTGCCAAGCC 1653 Query 331 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATC 390 | ||||||||| |||||||| | ||||||||| | || |||| || || ||||||| Sbjct 1652 CATTCCCTTGGATGTGGTTT---TGGATAGTAGACACAGAGAGTGAGAGCCTTGTTAATC 1596 Query 391 CATTCATGCGCGTCACTAATTAGATG 416 |||| |||| | | | |||||||||| Sbjct 1595 CATTTATGCACATAATTAATTAGATG 1570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1622211802624