Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq719970 138 4e-30 seq685440 134 5e-29 seq619775 134 5e-29 seq770568 111 5e-22 seq360308 111 5e-22 seq537721 109 2e-21 seq252438 102 3e-19 seq552020 93.3 1e-16 seq363121 93.3 1e-16 seq104818 93.3 1e-16 seq606544 84.2 7e-14 seq317558 78.8 3e-12 >seq719970 Length=571 Score = 138 bits (152), Expect = 4e-30 Identities = 153/203 (75%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 282 AAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTAC 340 |||||||||| ||||| | | ||| ||| || | |||| | | ||||||| || Sbjct 465 AAGCTATAGTTAAGGTGCACTGGGCCTTACCGCCTAGCCGTTGGTACTCTGCATCTTCAC 406 Query 341 TCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCG 400 | | ||||||||||||| | || ||||||| |||| ||||||||| ||||||| Sbjct 405 GAAGAATTCAATTTCACCGGGTCCATGTCAGAGACAGTAGGGCAGTCGTTACACCATTCG 346 Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 ||||||||| |||| ||||||||||||||||||||||||||| |||| ||||| Sbjct 345 TGCAGGTCGCTGCTTATACGACAAGGAATTTCGCTACCTTAGGATAGTTAGAGTTATTGT 286 Query 461 CGCCGTTTACTGGGGCTTCAATT 483 || |||||| |||| ||| ||| Sbjct 285 CGTCGTTTATCGGGGTTTCCATT 263 >seq685440 Length=1708 Score = 134 bits (148), Expect = 5e-29 Identities = 371/557 (67%), Gaps = 19/557 (3%) Strand=Plus/Plus Query 12 GTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAACCAGGCTGA 71 |||| |||||||||||||||| ||| || ||||| | || || | || | | Sbjct 910 GTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTAGCCCAA 969 Query 72 GGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCC 131 || |||||||| |||||||||||| |||||||||| | | ||||| |||||| | Sbjct 970 GGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTATT-CCCCATAGAAACTATCT 1028 Query 132 ACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATCCACTACGGTCA 188 ||| | ||||||| | || || || || ||||||| | || | | || Sbjct 1029 ACCTGAGACTGTCCTTTAGCCCGTAGGTCCTGACATAAGGTTATAATTCTAGCTCTTCCA 1088 Query 189 GAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACC 248 ||||||||| ||| | | ||| | || | | | || | || ||||| Sbjct 1089 GAGTGGTATCTCACTGATGGCTCGGGCCCTCCTGGAAGGAGGTCTTCTTTACCTTCCACC 1148 Query 249 TATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGT 305 || || | | || || | || ||||| ||| | | | ||||| | | |||| Sbjct 1149 TAAGCTGCGTAGGAAAGGCCC--AAACCCAATCCCAGGGAACAATGAAGCTTCATAGGGT 1206 Query 306 CTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTG-CAATTTCACCGGGCCT 364 |||| |||| | || | || ||||||| || | | || | |||||| || |||| Sbjct 1207 CTTTCTGTCCAGGTGCAGGCAATCCGCATCTTCACA-GAAATGTCTATTTCATCGAGCCT 1265 Query 365 GTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACA 423 | ||||||| | || |||||||||| || |||| |||||||||||| |||||| Sbjct 1266 CTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTTGTGCGGGTCGGAACTTATCCGACA 1324 Query 424 AGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 |||||||||| ||||| |||| |||||||||| |||||||| ||||||||||| | Sbjct 1325 AGGAATTTCGATACCTCAGGACCGTTATAGTTATGGCCGCCGTTCACTGGGGCTTC-GGT 1383 Query 484 ACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCA 543 ||| ||| || || | | |||| | ||||||||||| |||| |||| Sbjct 1384 CGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTAGGCA 1438 Query 544 GGCGTCAGTCCGTATAC 560 || ||||| || |||| Sbjct 1439 GGTGTCAGCCCCCATAC 1455 >seq619775 Length=5200 Score = 134 bits (148), Expect = 5e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 857 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 798 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||||||| || |||||||| Sbjct 797 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC 764 >seq770568 Length=12336 Score = 111 bits (122), Expect = 5e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 7881 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 7822 Query 446 GGTTATAGTTA 456 |||||||||| Sbjct 7821 CGTTATAGTTA 7811 >seq360308 Length=10769 Score = 111 bits (122), Expect = 5e-22 Identities = 91/108 (84%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 ||||||||| |||| | ||||||| | || |||||||||| ||||||| ||||| Sbjct 9325 ATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCG 9267 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 9266 GAACTTACCCGACAAGGAATTTCGATACCTTAGGACCGTTATAGTTAC 9219 >seq537721 Length=570 Score = 109 bits (120), Expect = 2e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 392 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTAT 451 |||| ||||||| |||||||||||| |||| ||||||||||| |||||||||| ||||| Sbjct 570 CGCCTTTCGTGCGGGTCGGAACTTATCCGAAAAGGAATTTCGGTACCTTAGGACCGTTAT 511 Query 452 AGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||| |||||||| ||||||||||| Sbjct 510 AGTTATGGCCGCCGTTCACTGGGGCTTC 483 >seq252438 Length=379 Score = 102 bits (112), Expect = 3e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 404 AGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGC 463 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 80 AGGCCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACTGTTATAGTTACGGCCGT 139 Query 464 CGTTTACTGGGGCTTC 479 |||| || |||||||| Sbjct 140 CGTTCACCGGGGCTTC 155 >seq552020 Length=8072 Score = 93.3 bits (102), Expect = 1e-16 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||| | ||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 2939 CTTATCAGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 2998 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 ||||||| | | ||| ||| || || | | |||| | ||| ||||||| Sbjct 2999 GGGCTTCGA-TCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCC 3052 Query 533 AGCACCGGGCAGGCGTCA 550 |||| |||||||||||| Sbjct 3053 GGCACTGGGCAGGCGTCA 3070 >seq363121 Length=6039 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| || |||| ||| ||||||||| ||||||||||||| ||||||||| || Sbjct 5366 TCGTTACGCCTTTTGTGCGGGTGGGAACTTACTCGACAAGGAATTTAGCTACCTTATGAC 5425 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||||| || | |||||| Sbjct 5426 CGTTATAGTTACGGTTTCCGTTCACCGAGGCTTC 5459 >seq104818 Length=622 Score = 93.3 bits (102), Expect = 1e-16 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||||| | | || || ||||||||| |||| || Sbjct 236 GCATCTTCACAGAGAATTCAATTTCACCGAGTCCATGTCGGAAACAGCAGGGCAGTCATT 295 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTA 441 || |||||||||||||||| ||||| |||||||||||||| | |||||| Sbjct 296 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCACAACCTTA 346 >seq606544 Length=821 Score = 84.2 bits (92), Expect = 7e-14 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||||| Sbjct 471 GACGAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC 530 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 | ||| ||| || || | | |||| | ||| ||||||| |||| | Sbjct 531 -GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTG 584 Query 540 GGCAGGCGTCAGTCCGTATAC 560 |||||||||||| || |||| Sbjct 585 GGCAGGCGTCAGCCCCCATAC 605 >seq317558 Length=613 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 393 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 234 GCCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGAT 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688878041088