Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq456161 109 1e-21 seq692555 102 2e-19 seq609128 100 6e-19 seq559850 93.3 9e-17 seq533196 91.5 3e-16 seq765720 89.7 1e-15 seq324309 87.8 4e-15 seq737182 78.8 2e-12 seq428776 75.2 2e-11 >seq456161 Length=1433 Score = 109 bits (120), Expect = 1e-21 Identities = 154/215 (72%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||| | ||| ||||| | | ||| |||| || Sbjct 368 AAAAGAAGTTCACGACCCGTGGGCCCTCTA-CCTCCACGCGGCATTGCTCCGTCAGGCTT 426 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 || |||||| || ||||| |||||||||||||||||||||| ||| ||||||| || Sbjct 427 TCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCGTGTCTTAG 486 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 487 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 546 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || | || |||| ||||| |||||| ||| || Sbjct 547 GCCTCACCAACTAGCTAATCAAACGCAAGCCCCTC 581 >seq692555 Length=413 Score = 102 bits (112), Expect = 2e-19 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| |||||||||||||||||||||| ||| ||| Sbjct 183 TCAGGCTTTCGCCCATTGTAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 242 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || |||||||||||||||| || | ||||||| || Sbjct 243 TGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGA 278 >seq609128 Length=9556 Score = 100 bits (110), Expect = 6e-19 Identities = 110/145 (76%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||| | ||| ||||| | | ||| ||||||| Sbjct 7314 AAAAGAAGTTCACGACCCGTGGGCCCTCTA-CCTCCACGCGGCATTGCTCCGTCAGACTT 7372 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | ||||||| || ||||| || |||||||||| |||||||||||| |||||||||| Sbjct 7373 TTGCCCATTGAGGAAAATTCCCCATTGCTGCCTCCTGTAGGAGTTTGGGTCGTGTCTCAG 7432 Query 201 TTCCAATGTGGGGGACCTTCCTCTC 225 | | | ||||| || | ||||||| Sbjct 7433 TCCTACTGTGGCTGATCATCCTCTC 7457 >seq559850 Length=11969 Score = 93.3 bits (102), Expect = 9e-17 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 157 ATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGAC 216 ||||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| || Sbjct 4902 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGAT 4961 Query 217 CTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCT 276 | ||||||| || | ||| ||| | | || ||| || || || | || |||| || Sbjct 4962 CATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCT 5021 Query 277 AATGGAACGCATCCCCATC 295 ||| ||||| ||| || Sbjct 5022 AATCAGACGCAAGCCCCTC 5040 >seq533196 Length=6825 Score = 91.5 bits (100), Expect = 3e-16 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 158 TTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACC 217 |||| |||||||||||||||||||||| ||| |||||||||||| ||| ||||| || | Sbjct 2471 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATC 2412 Query 218 TTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTA 277 ||||||| || | ||| ||| | | || ||| || || || | || |||| ||| Sbjct 2411 ATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTA 2352 Query 278 ATGGAACGCA 287 || ||||| Sbjct 2351 ATCAGACGCA 2342 >seq765720 Length=1578 Score = 89.7 bits (98), Expect = 1e-15 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | |||| | ||| |||| || | ||| |||| || Sbjct 298 AAAAGAAGTTCACGACCCGTGGGCCCTTTA-CCTCCACG--ACATTGCTCTGTCAGGCTT 354 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| ||||| | || ||||| ||||||||||||| ||||||| ||| || |||||||| Sbjct 355 TCGCCCATTAAGGAAAATTCCCCACTGCTGCCTCCTATAGGAGTCTGGGCCATGTCTCAG 414 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | | | ||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 415 TCCTGGTATGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 474 Query 261 ACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | || |||| ||||| ||||| ||| || Sbjct 475 GTCTCACCAACTAGCTAATCAGACGCAAGCCCCTC 509 >seq324309 Length=907 Score = 87.8 bits (96), Expect = 4e-15 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || || |||||| || ||||| ||||||| |||||||||||||| ||| || Sbjct 791 TCAGGCTTTCACCCATTGTAGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGTCG 732 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || |||||||||||||||| || | ||||||| || Sbjct 731 TGCCTCAGTTCCAATGTGGCTGATCATCCTCTCGGA 696 >seq737182 Length=910 Score = 78.8 bits (86), Expect = 2e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 |||| |||| || ||| |||||| |||| ||| | |||||||||| ||| ||||| || Sbjct 560 CTGGATCAGGCTTTCGCCCATTGTCCAAGATTTCCCACTGCTGCCCCCCACGGGAGTCTG 619 Query 188 GACCGTGTCTCAGTTCCAATGTG 210 | |||||||||||| ||| |||| Sbjct 620 GGCCGTGTCTCAGTCCCAGTGTG 642 >seq428776 Length=928 Score = 75.2 bits (82), Expect = 2e-11 Identities = 82/108 (76%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||| | ||| ||| | || | ||| |||| || Sbjct 103 AAAAGAAGTTCACGACCCGTGGGCCCTCTA-CCTCCACACGACATTGCTCCGTCAGGCTT 161 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGG 188 ||| |||||| || ||||| |||||||||||||||||||||| ||| Sbjct 162 TCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060310649856